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Ligand · 0V9

0V9 · (19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate

0V9, (19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate (C37 H72 N O8 P, 689.9 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (6 PDB entries). Every…

Component
0V9
Formula
C37 H72 N O8 P
Class
ligand
Structures
6
PDB entries
6

Binding sites

0V9 in 6 structures; the first of them:

  • 7O0U · Cryo-EM structure (model_1a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.4… · 0V9 AJ104 · binds GLN35, LYS43, VAL27, ALA30, SER31, HIS34, TRP38, PHE44 and 4 more
  • 7O0V · Cryo-EM structure (model_2a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.5… · 0V9 C11001 · binds LYS132, ASN60, LEU61, TRP62, GLN63, VAL23, LEU26, VAL27 and 3 more

Residues it binds most

ALA 72, TRP 74, VAL 70, LEU 82, PHE 80, SER 81, HIS 68, ILE 45, THR 22, GLY 17 (residue and the binding sites it lines).

Found with

  • BCL · Bacteriochlorophyll A
  • BPH · Bacteriopheophytin A
  • CD4 · (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate
  • CRT · Spirilloxanthin
  • HEC · Heme C
  • MQ8 · Menaquinone 8
  • PGW · (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate
  • UYH · [(2~{S})-3-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate
  • V75 · (2~{S},3~{S},4~{S},5~{S})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid
  • V7B · [(2~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl] 12-methyltridecanoate
  • V7N · (2~{E},4~{E},6~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{Z},24~{E},26~{E},28~{E})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid
  • FE · Fe (III) ion

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