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Ligand · MQ8

MQ8 · Menaquinone 8

MQ8, Menaquinone 8 (C51 H72 O2, 717.1 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
MQ8
Formula
C51 H72 O2
Class
ligand
Structures
7
PDB entries
5

Binding sites

MQ8 in 7 structures; the first of them:

  • 7C52 · Co-crystal structure of a photosynthetic LH1-RC in complex with electron donor HiPIP · MQ8 M404 · binds PHE30, PHE40, LEU44, TRP109, LEU214, LEU215, MET218, HIS219 and 13 more
  • 7C9R · Structure of photosynthetic LH1-rc super-complex of thiorhodovibrio strain 970 · MQ8 M405 · binds PHE30, VAL40, TRP101, LEU215, MET218, HIS219, THR222, ALA248 and 8 more
  • 8K5O · Cryo-EM structure of the RC-LH core comples from Halorhodospira halochloris · MQ8 M705 · binds VAL27, PHE30, TYR31, VAL32, GLY36, VAL37, ILE40, TRP101 and 27 more
  • 5Y5S · Structure of photosynthetic LH1-rc super-complex at 1.9 ångström resolution · MQ8 M405 · binds PHE30, PHE40, LEU44, TRP109, LEU214, LEU215, MET218, HIS219 and 13 more
  • 7C52 · Co-crystal structure of a photosynthetic LH1-rc in complex with electron donor hipip · MQ8 M404 · binds PHE30, PHE40, LEU44, TRP109, LEU214, LEU215, MET218, HIS219 and 13 more
  • 7C9R · Structure of photosynthetic LH1-rc super-complex of thiorhodovibrio strain 970 · MQ8 M405 · binds PHE30, VAL40, TRP101, LEU215, MET218, HIS219, THR222, ALA248 and 8 more
  • 7VRJ · Structure of photosynthetic LH1-rc super-complex of allochromatium tepidum · MQ8 M404 · binds PHE29, ALA42, VAL46, MET217, HIS218, THR221, ALA247, TRP251 and 7 more

Residues it binds most

MET 8, PHE 9, TRP 9, ALA 7, LEU 8, VAL 9, THR 8, ILE 9, HIS 8, ASN 7 (residue and the binding sites it lines).

Found with

  • CDL · Cardiolipin
  • PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate
  • UQ8 · Ubiquinone-8
  • FE · Fe (III) ion
  • BCL · Bacteriochlorophyll A
  • BPH · Bacteriopheophytin A
  • CA · Calcium ion
  • LMT · Dodecyl-beta-D-maltoside
  • CRT · Spirilloxanthin
  • HEM · Protoporphyrin IX containing Fe
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • PEF · Di-palmitoyl-3-sn-phosphatidylethanolamine

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