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Ligand · V75

V75 · (2~{S},3~{S},4~{S},5~{S})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid

V75, (2~{S},3~{S},4~{S},5~{S})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid (C10 H14 O8, 262.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
V75
Formula
C10 H14 O8
Class
ligand
Structures
4
PDB entries
4

Binding sites

V75 in 4 structures; the first of them:

  • 7O0U · Cryo-EM structure (model_1a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.4… · V75 C406 · binds THR108, LEU109, PRO110, ASN111, GLY112
  • 7O0V · Cryo-EM structure (model_2a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.5… · V75 C405 · binds THR108, LEU109, PRO110, ASN111, GLY112
  • 7O0W · Cryo-EM structure of the RC-dLH complex (model_1b) from Gemmatimonas phototrophica at… · V75 C1006 · binds THR108, LEU109, PRO110, ASN111, GLY112
  • 7O0X · Cryo-EM structure (model_2b) of the RC-dLH complex from Gemmatimonas phototrophica at… · V75 C1006 · binds THR108, LEU109, PRO110, ASN111, GLY112

Residues it binds most

PRO 8, SER 4, ASN 4, GLY 4, LEU 4, THR 4, TYR 4 (residue and the binding sites it lines).

Found with

  • 0V9 · (19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate
  • BCL · Bacteriochlorophyll A
  • BPH · Bacteriopheophytin A
  • CD4 · (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate
  • CRT · Spirilloxanthin
  • HEC · Heme C
  • MQ8 · Menaquinone 8
  • PGW · (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate
  • UYH · [(2~{S})-3-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate
  • V7B · [(2~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl] 12-methyltridecanoate
  • V7N · (2~{E},4~{E},6~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{Z},24~{E},26~{E},28~{E})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid
  • FE · Fe (III) ion

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