Ligand · P6S
P6S · benzyl hydrogen carbonate
P6S, benzyl hydrogen carbonate (C8 H8 O3, 152.2 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (7 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- P6S
- Formula
- C8 H8 O3
- Class
- ligand
- Structures
- 8
- PDB entries
- 7
Binding sites
P6S in 8 structures; the first of them:
- 6Y4N · Structure of Tubulin Tyrosine Ligase in Complex with Tb116 · P6S C1006 · binds THR221, LEU248, PRO325, TYR357
- 8OXX · Transglutaminase 3 in complex with inhibitor Z-don and DH patient-derived Fab DH63-B02 · P6S A507 · binds VAL165, ARG248, GLN272, TRP274, ASN329, PHE330, ONL508, DVA509
- 6XBG · Crystal structure of the SARS-cov-2 (COVID-19) main protease in complex with inhibitor… · P6S C1 · binds MET165, GLU166, PRO168, GLN189, THR190, ALA191, LEU2
- 6XBH · Crystal structure of the SARS-cov-2 (COVID-19) main protease in complex with inhibitor… · P6S C1 · binds ASN142, MET165, GLU166, GLN189, PHE2, ELL3
- 6Y4N · Structure of tubulin tyrosine ligase in complex with TB116 · P6S C1006 · binds LEU248, PRO325, TYR357
- 7BOS · Human SIRT2 in complex with myristoyl thiourea inhibitor, NO.13 · P6S B1 · binds GLY236, GLU237, SER238, GLN267, LYS2, ARG3
- 7BOT · Human SIRT2 in complex with myristoyl thiourea inhibitor, NO.23 · P6S B1 · binds GLY236, GLU237, SER238, LEU239, LYS2
- 7M2P · Structure of the SARS-cov-2 3CL protease in complex with inhibitor 18 · P6S B1 · binds MET165, GLU166, PRO168, GLN189, THR190, ALA191, VAL2
Residues it binds most
GLN 6, GLU 6, LEU 5, MET 4, PRO 4, THR 3, ALA 2, ARG 2, ASN 2, GLY 2 (residue and the binding sites it lines).
Found with
- CA · Calcium ion
- ACP · Phosphomethylphosphonic acid adenylate ester
- F4R · N-dodecylmethanethioamide
- GDP · Guanosine-5'-diphosphate
- GTP · Guanosine-5'-triphosphate
- O9B · (2~{R})-1-methylpiperidine-2-carboxylic acid
- O9K · [(1~{R},3~{R})-1-(4-methanoyl-1,3-thiazol-2-yl)-4-methyl-3-(methylamino)pentyl] ethanoate
- O9N · methyl (2~{S},4~{S})-2,4-bis(azanyl)-5-phenyl-pentanoate
- MG · Magnesium ion
- NA · Sodium ion
- ZN · Zinc ion
- NH2 · Amino group
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