GL1X · GenesisL1 explorer

Ligand · GER

GER · Geran-8-yl geran

GER, Geran-8-yl geran (C20 H34, 274.5 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
GER
Formula
C20 H34
Class
ligand
Structures
7
PDB entries
5

Binding sites

GER in 7 structures; the first of them:

  • 5E8F · Structure of Fully modified geranylgeranylated PDE6C Peptide in complex with PDE6D · GER D901 · binds PHE15, LEU17, MET20, LEU22, TRP32, SER39, ALA47, VAL49 and 15 more
  • 5U9J · Crystal structure of the FKBP domain of human aryl hydrocarbon receptor-interacting… · GER A301 · binds PHE35, PHE37, MET59, ILE61, VAL71, TRP72, LEU75, CYS89 and 7 more
  • 6J7F · Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP · GER B403 · binds LEU96, GLN103, ARG144, PHE147, GLY192, GLN193, TYR195, CYS196 and 7 more
  • 7Q9Q · Crystal structure of PDE6D Geranylgeranylated cystein complex · GER BBB203 · binds PHE15, MET20, SER39, ILE53, VAL59, ARG61, LEU63, LEU76 and 5 more
  • 8SL3 · Human adenylyl Cyclase 5 in complex with Gbg · GER G101 · binds LEU251, CYS68
  • 5U9J · Crystal structure of the fkbp domain of human aryl hydrocarbon receptor-interacting… · GER A301 · binds PHE35, PHE37, MET59, ILE61, VAL71, TRP72, LEU75, LEU100 and 3 more
  • 6J7F · Complex of ggtaseiii, farnesyl-YKT6 (C-terminal methylated), and ggpp · GER B403 · binds LEU96, GLN103, ARG144, PHE147, GLY192, GLN193, TYR195, CYS196 and 7 more

Residues it binds most

LEU 10, PHE 9, ILE 7, VAL 7, CYS 6, TRP 8, TYR 6, GLN 5, SER 3, ARG 5 (residue and the binding sites it lines).

Found with

  • DPO · Diphosphate
  • FAR · Farnesyl
  • NA · Sodium ion
  • IPA · Isopropyl alcohol
  • TLA · L(+)-tartaric acid
  • EDO · 1,2-ethanediol

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.