Ligand · DPO
DPO · Diphosphate
DPO, Diphosphate (O7 P2 -4, 173.9 g/mol), in the MolNFT structures on GenesisL1: bound in 122 records (87 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- DPO
- Formula
- O7 P2 -4
- Class
- ligand
- Structures
- 122
- PDB entries
- 87
Binding sites
DPO in 122 structures; the first of them:
- 5ESS · Crystal Structure of M. tuberculosis MenD bound to Mg2+ and covalent intermediate I (a… · DPO A606 · binds SER377, ASN378, GLY439, ASP440, LEU441, THR442, SER467, ASP469 and 3 more
- 5ILY · Tobacco 5-epi-aristolochene synthase with BIS-TRIS buffer molecule and diphosphate (PPi) · DPO A605 · binds ARG264, ASP301, THR401, ARG441, ASP444, THR448, GLU452
- 5IPL · SigmaS-transcription initiation complex with 4-nt nascent RNA · DPO C1401 · binds GLU813, ARG1106, ASP460, ARG731, ARG933, HIS936, ILE937, U17
- 5KFH · Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 90s · DPO A509 · binds ASP13, MET14, ASP15, CYS16, PHE17, TYR52, ARG55, ARG61 and 3 more
- 5KFJ · Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 180s · DPO A508 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KFK · Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 300s · DPO A508 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KFL · Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 600s · DPO A507 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KFP · Human DNA polymerase eta-DNA ternary complex with Sp-dATP-alpha-S: reaction with 20 mM… · DPO A509 · binds ASP13, MET14, ASP15, CYS16, PHE17, TYR52, ARG55, ARG61 and 3 more
- 5KFQ · Human DNA polymerase eta-DNA ternary complex with Sp-dATP-alpha-S: reaction with 10 mM… · DPO A508 · binds ASP13, MET14, ASP15, CYS16, PHE17, TYR52, ARG55, ARG61 and 3 more
- 5KFR · Human DNA polymerase eta-DNA ternary complex with Sp-dATP-alpha-S: reaction with 20 mM… · DPO A507 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KFW · Human DNA polymerase eta R61A-DNA ternary complex: reaction with 1 mM Mg2+ for 200s · DPO A508 · binds ASP13, MET14, ASP15, CYS16, PHE17, TYR52, ARG55, ASP115 and 2 more
- 5KFX · Human DNA polymerase eta R61A-DNA ternary complex: reaction with 1 mM Mg2+ for 300s · DPO A508 · binds ASP13, MET14, ASP15, CYS16, PHE17, TYR52, ARG55, ASP115 and 2 more
- 5KFZ · Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s… · DPO A506 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KG0 · Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s… · DPO A507 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KG2 · Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s… · DPO A507 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KG3 · Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s… · DPO A507 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KG4 · Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s… · DPO A507 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KG5 · Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s… · DPO A507 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KG6 · Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s… · DPO A507 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5KG7 · Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s… · DPO A507 · binds ASP13, MET14, ASP15, CYS16, PHE17, ALA49, TYR52, ARG55 and 4 more
- 5LX5 · Crystal structure of visfatin in complex with SAR154782-rp. · DPO A502 · binds ARG40, ARG392, SER398, LYS400, LYS415, LYS423, ARG196
- 5O6K · Structure of Polyphosphate Kinase from Meiothermus ruber N121D · DPO B302 · binds GLY28, LYS231, TRP233
- 5YUY · DNA polymerase IV - DNA ternary complex 9 · DPO F903 · binds ASP8, MET9, ASP10, CYS11, PHE12, THR43, TYR46, ARG49 and 4 more
- 5ZLV · DNA polymerase IV - DNA ternary complex with 50mM MgCl2 · DPO A903 · binds MET9, ASP10, CYS11, PHE12, THR43, ARG49, ASP103, LYS157 and 1 more
- 6BPL · E. coli MsbA in complex with LPS and inhibitor G907 · DPO B609
- 6IG1 · DNA polymerase IV - DNA ternary complex 10 · DPO F903 · binds ASP8, MET9, ASP10, CYS11, PHE12, THR43, ARG49, ASP103 and 3 more
- 6J7F · Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP · DPO B404 · binds LYS135, TYR191, SER193, TYR195, HIS190, ARG232, LYS235, TYR241 and 1 more
- 6K32 · RdRp complex · DPO A1303 · binds ASP144, ARG147, PRO187, ARG791
- 6UTV · E. coli sigma-S transcription initiation complex with a 6-nt RNA (Fresh" crystal soaked… · DPO DDD1504 · binds GLU813, ARG1106, ASN458, ASP460, ARG731, ARG933, ILE937, U19
- 6UTW · E. coli sigma-S transcription initiation complex with a 4-nt RNA (Fresh" crystal)" · DPO DDD1504 · binds GLU813, SER1105, ARG1106, ASP460, ARG731, ARG933, HIS936, ILE937 and 1 more
- 6UTZ · E. coli sigma-S transcription initiation complex with a 6-nt RNA (Fresh" crystal soaked… · DPO CCC1402 · binds ARG678, ARG1106, ASP460, ARG731, ARG933, ILE937, U19
- 6UU9 · E. coli mutant sigma-S transcription initiation complex with an 8-nt RNA ("Fresh" mutant… · DPO DDD1506 · binds ARG1106, ASN458, ASP460, ARG933, HIS936, ILE937
- 7EJ3 · UTP cyclohydrolase · DPO A802 · binds ARG249, VAL250, ASP252, TYR270, ARG338, SER360, MET361, SER362 and 3 more
- 7M80 · Human DNA Pol eta with dA-ended primer and dATP: in crystallo reaction for 100 s · DPO A508 · binds ASP13, MET14, ASP15, CYS16, PHE17, TYR52, ARG55, ARG61 and 3 more
- 7M87 · Human DNA Pol eta S113A with dA-ended primer and dATP: in crystallo reaction for 230 s · DPO A505 · binds ASP13, MET14, ASP15, CYS16, PHE17, TYR52, ARG55, ARG61 and 3 more
Residues it binds most
ASP 141, ARG 148, LYS 130, TYR 113, PHE 99, MET 92, CYS 90, DA 44, ALA 43, DG 35 (residue and the binding sites it lines).
Found with
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