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Ligand · BXY

BXY · alpha-D-arabinofuranose

BXY, alpha-D-arabinofuranose (C5 H10 O5, 150.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
BXY
Formula
C5 H10 O5
Class
sugar
Structures
6
PDB entries
4

Binding sites

BXY in 6 structures; the first of them:

  • 7BVG · Cryo-EM structure of Mycobacterium smegmatis arabinosyltransferase EmbA-EmbB-AcpM2 in… · BXY C1 · binds SER284, ASP285, TYR288, TRP578, HIS580, TRP972, TRP1012
  • 7BVH · Crystal structure of arabinosyltransferase EmbC2-AcpM2 complex from Mycobacterium… · BXY E1 · binds ASP279, TYR282, TRP572, HIS574, TRP627, TRP965, VAL1004
  • 7T1W · Crystal structure of human Fab A194-01 in complex with its synthetic tetrasaccharide Ara4… · BXY A1 · binds ALA56, ASN57
  • 8IC1 · endo-alpha-D-arabinanase EndoMA1 D51N mutant from Microbacterium arabinogalactanolyticum… · BXY E1 · binds ASN361, TYR382, ASN383

Residues it binds most

TRP 31, TYR 33, ASN 36, ASP 28, ARG 22, ALA 19, PHE 18, PRO 12, GLY 12, MET 11 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • PO4 · Phosphate ion
  • CDL · Cardiolipin
  • F8L · [(2Z,6E,10E,14Z,18E,22Z,26Z)-3,7,11,15,19,23,27,31,35, 39-decamethyltetraconta-2,6,10,14,18,22,26,30,34,38-decaenyl] [(2S,3S,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl] hydrogen phosphate
  • PNS · 4'-phosphopantetheine
  • BGC · beta-D-glucopyranose
  • GLC · alpha-D-glucopyranose
  • BXX · beta-D-arabinofuranose
  • OYO · (3~{a}~{S},5~{R},6~{R},6~{a}~{S})-5-(hydroxymethyl)-2,2-dimethyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]dioxol-6-ol
  • NA · Sodium ion
  • CIT · Citric acid
  • EDO · 1,2-ethanediol

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