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Ligand · BXX

BXX · beta-D-arabinofuranose

BXX, beta-D-arabinofuranose (C5 H10 O5, 150.1 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
BXX
Formula
C5 H10 O5
Class
ligand
Structures
5
PDB entries
4

Binding sites

BXX in 5 structures; the first of them:

  • 7T1W · Crystal structure of human Fab A194-01 in complex with its synthetic tetrasaccharide Ara4… · BXX A4 · binds GLY33, SER50, ILE51, SER52, ASN57, ASP99, TRP100, ARG102 and 3 more
  • 7T1X · Crystal structure of human Fab A194-01 in complex with its synthetic heptasaccharide… · BXX A4 · binds PHE93
  • 7V1W · Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium in… · BXX A602 · binds TRP267, GLY269, GLU270, THR288, GLY289, GLU291, ASP292, ALA297 and 4 more
  • 8IC7 · exo-beta-D-arabinofuranosidase ExoMA2 from Microbacterium arabinogalactanolyticum in… · BXX B911 · binds ASP82, ALA83, PHE434, ASP435
  • 7V1W · Difructose dianhydride I SYNTHASE/HYDROLASE (ALPHAFFASE1) from bifidobacterium dentium in… · BXX A602 · binds TRP267, GLY269, GLU270, THR288, GLY289, GLU291, ASP292, ALA297 and 4 more

Residues it binds most

TRP 24, GLY 22, ASP 27, GLU 14, THR 14, TYR 24, SER 10, ARG 13, ALA 14, ASN 10 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • BXY · alpha-D-arabinofuranose
  • EDO · 1,2-ethanediol
  • MG · Magnesium ion
  • MAN · alpha-D-mannopyranose
  • CL · Chloride ion
  • CIT · Citric acid
  • MPD · (4S)-2-methyl-2,4-pentanediol

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