MolNFT v1 · #189081 · protein
Difructose dianhydride I SYNTHASE/HYDROLASE (ALPHAFFASE1) from bifidobacterium dentium in complex with beta-D-arabinofuranose
7V1W: “Difructose dianhydride I SYNTHASE/HYDROLASE (ALPHAFFASE1) from bifidobacterium dentium in complex with…”. X-ray diffraction, 2 ligands (BXX, CA), 20 pockets (best druggability 0.79). MolNFT v1 #189081 on GenesisL1: 3D structure…
- PDB
- 7V1W
- Type
- protein
- Length
- 2,682 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Difructose dianhydride I SYNTHASE/HYDROLASE (ALPHAFFASE1)
- UniProt
- A0A6L9SN29
- Ligands
- BXX, CA
- Pockets
- 20 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Difructose dianhydride I SYNTHASE/HYDROLASE (ALPHAFFASE1) | protein | 447 | 20% helix, 34% strand | A0A6L9SN29 |
Ligands and binding sites
- BXX · beta-D-arabinofuranose · ligand · 6 copies · chains A, C, B, D, E, F
- CA · Calcium ion · metal · 6 copies · chains A, C, B, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1102 | 0.79 | 0.80 | 115 | BXX |
| 2 | 449 | 0.74 | 0.84 | 62 | BXX |
| 3 | 78 | 0.74 | 0.98 | 21 | empty |
| 4 | 82 | 0.74 | 0.97 | 22 | empty |
| 5 | 77 | 0.74 | 0.97 | 22 | empty |
Interfaces
12 interfaces between chains.
- A–C · 2991 Ų buried · 47 hydrogen bonds · protein-protein
- B–C · 2956 Ų buried · 45 hydrogen bonds · protein-protein
- D–F · 2941 Ų buried · 43 hydrogen bonds · protein-protein
- D–E · 2937 Ų buried · 46 hydrogen bonds · protein-protein
- E–F · 2909 Ų buried · 43 hydrogen bonds · protein-protein
Compared structures
- 7V1W · Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A6L9SN29
- Elsewhere: RCSB PDB 7V1W · PDBe 7V1W · UniProt A0A6L9SN29
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.