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Ligand · OYO

OYO · (3~{a}~{S},5~{R},6~{R},6~{a}~{S})-5-(hydroxymethyl)-2,2-dimethyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]dioxol-6-ol

OYO, (3~{a}~{S},5~{R},6~{R},6~{a}~{S})-5-(hydroxymethyl)-2,2-dimethyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]dioxol-6-ol (C8 H14 O5, 190.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding…

Component
OYO
Formula
C8 H14 O5
Class
ligand
Structures
1
PDB entries
1

Binding sites

OYO in 1 structure; the first of them:

  • 8IC1 · endo-alpha-D-arabinanase EndoMA1 D51N mutant from Microbacterium arabinogalactanolyticum… · OYO A508 · binds ASP33, ASN51, PHE53, GLY62, GLY63, TRP138, TRP313, TYR316

Residues it binds most

GLY 4, TRP 4, ASN 4, ASP 4, PHE 4, TYR 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NA · Sodium ion
  • BXY · alpha-D-arabinofuranose
  • GOL · Glycerol
  • MES · 2-(N-morpholino)-ethanesulfonic acid
  • PEG · Di(hydroxyethyl)ether
  • PGE · Triethylene glycol

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