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Ligand · 8PK

8PK · 4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-alpha-L-fucopyranose

8PK, 4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-alpha-L-fucopyranose (C9 H18 O6, 222.2 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
8PK
Formula
C9 H18 O6
Class
ligand
Structures
6
PDB entries
3

Binding sites

8PK in 6 structures; the first of them:

  • 5MUI · Glycoside hydrolase BT_0996 · 8PK B8 · binds ALA160, VAL161, LEU203, THR204, TYR206, GLY229, LYS238, GLN240
  • 5MUJ · BT0996 RGII Chain B Complex · 8PK B8 · binds ALA160, VAL161, LEU203, THR204, TYR206, GLY229, LYS238, GLY239 and 1 more
  • 5MWK · Glycoside hydrolase BT_0986 · 8PK B6 · binds LYS81, PHE126, LEU643, ASP644, ILE646
  • 5MUI · Glycoside hydrolase BT_0996 · 8PK B8 · binds ALA160, LEU203, TYR206, GLY229
  • 5MUJ · BT0996 rgii chain B complex · 8PK B8 · binds ALA160, LEU203, THR204, TYR206, GLY229, LYS238
  • 5MWK · Glycoside hydrolase BT_0986 · 8PK B6 · binds LYS81, LEU643, ASP644, ILE646

Residues it binds most

LEU 6, GLY 4, LYS 5, ALA 4, TYR 4, THR 3, ASP 2, ILE 2, VAL 2, GLN 1 (residue and the binding sites it lines).

Found with

  • 8OQ · alpha-D-aceric acid
  • ARA · alpha-L-arabinopyranose
  • GAL · beta-D-galactopyranose
  • RAM · alpha-L-rhamnopyranose
  • FUB · beta-L-arabinofuranose
  • XXM · 3-C-(hydroxylmethyl)-alpha-D-erythrofuranose
  • CA · Calcium ion
  • BR · Bromide ion
  • IOD · Iodide ion
  • ACT · Acetate ion

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