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Ligand · FUB

FUB · beta-L-arabinofuranose

FUB, beta-L-arabinofuranose (C5 H10 O5, 150.1 g/mol), in the MolNFT structures on GenesisL1: bound in 16 records (10 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
FUB
Formula
C5 H10 O5
Class
ligand
Structures
16
PDB entries
10

Binding sites

FUB in 16 structures; the first of them:

  • 5GLO · Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a… · FUB A403 · binds ASP57, MET90, TRP125, ALA126, ILE176, ASP177, GLU268, THR317 and 2 more
  • 5GLQ · Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a… · FUB A403 · binds ASP57, PHE88, MET90, TRP125, ALA126, ILE176, ASP177, GLU268 and 5 more
  • 5GLR · Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a… · FUB A404 · binds ASP57, MET90, TRP125, ALA126, ILE176, ASP177, GLU268, THR317 and 2 more
  • 5MUI · Glycoside hydrolase BT_0996 · FUB B6 · binds CYS62, ILE151, GLU159, TYR206, LYS207, ASN227, GLN240, ILE270 and 3 more
  • 5OCP · The periplasmic binding protein component of the arabinose ABC transporter from… · FUB A408 · binds GLU11, SER12, TRP14, ARG15, ASP88, ARG89, PHE107, ALA139 and 5 more
  • 5Z5F · Crystal structure of a thermostable glycoside hydrolase family 43 {beta}-1,4-xylosidase… · FUB A602 · binds ASP14, SER29, PHE31, PHE73, ALA74, ILE120, ASP121, GLU177 and 6 more
  • 5Z5I · Crystal structure of a thermostable glycoside hydrolase family 43 {beta}-1,4-xylosidase… · FUB A602 · binds ASP14, SER29, PHE31, PHE73, ALA74, ILE120, ASP121, GLU177 and 6 more
  • 6LCE · Crystal Structure of beta-L-arabinobiose binding protein - selenomethionine derivative · FUB B2 · binds ARG56, ASP108, VAL109, ASP159, GLY213, PHE217, PHE323, GLY325 and 2 more
  • 6LCF · Crystal Structure of beta-L-arabinobiose binding protein - native · FUB C1 · binds ARG56, PRO58, ASN85, ASP159, SER211, GLY213, ALA214, GLY271 and 2 more
  • 9B4H · Chlamydomonas reinhardtii mastigoneme filament · FUB A41 · binds LYS1796, LEU1832, GLN1853, HYP1855

Residues it binds most

HYP 224, SER 61, ARG 48, ASP 26, PHE 18, ASN 26, ALA 25, GLY 15, THR 24, GLU 22 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • AHR · alpha-L-arabinofuranose
  • ARA · alpha-L-arabinopyranose
  • XYP · beta-D-xylopyranose
  • NA · Sodium ion
  • ACT · Acetate ion
  • 8OQ · alpha-D-aceric acid
  • 8PK · 4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-alpha-L-fucopyranose
  • GAL · beta-D-galactopyranose
  • RAM · alpha-L-rhamnopyranose
  • XYS · alpha-D-xylopyranose
  • GOL · Glycerol

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