Ligand · ARA
ARA · alpha-L-arabinopyranose
ARA, alpha-L-arabinopyranose (C5 H10 O5, 150.1 g/mol), in the MolNFT structures on GenesisL1: bound in 16 records (11 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- ARA
- Formula
- C5 H10 O5
- Class
- sugar
- Structures
- 16
- PDB entries
- 11
Binding sites
ARA in 16 structures; the first of them:
- 4ZEB · PBP AccA from A. tumefaciens C58 in complex with agrocinopine A · ARA A601 · binds ILE52, SER53, ASN54, TYR145, TRP178, ASN284, TRP418, SER419 and 4 more
- 5GLO · Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a… · ARA A404 · binds ASN82, ASP83, MET84, GLY85, PHE88, TRP125, ILE195, TRP196 and 4 more
- 5GLP · Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a… · ARA A403 · binds ASP57, SER72, PHE88, MET90, TRP125, ALA126, ILE176, ASP177 and 4 more
- 5GLR · Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a… · ARA A403 · binds ASP57, SER72, PHE88, MET90, TRP125, ALA126, ASP177, GLU268 and 3 more
- 5LA0 · The mechanism by which arabinoxylanases can recognise highly decorated xylans · ARA A605 · binds GLU68, TRP69, TYR92, GLY134, ASN135, GLY136, ASN139, ASN170 and 3 more
- 5MUI · Glycoside hydrolase BT_0996 · ARA B4 · binds TYR158, GLU159, PHE291
- 5MWK · Glycoside hydrolase BT_0986 · ARA B4 · binds PHE126, TRP276, GLN461, GLU561, TRP563, HIS569, LYS571
- 6ABP · Sugar-binding and crystallographic studies of an arabinose-binding protein mutant… · ARA A307 · binds LYS10, GLU14, TRP16, ASP90, LEU145, THR147, ARG151, MET204 and 2 more
- 6X8D · Arabinose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain · ARA A207 · binds ASP110, ASP111, GLN129, SER130, ASP155, GLN156, GLY157, GLY158 and 1 more
- 5LA0 · The mechanism by which arabinoxylanases can recognise highly decorated xylans · ARA A605 · binds GLU68, GLY134, ASN135, GLY136, ASN139, ASN170, PHE310, VAL318
- 5MUI · Glycoside hydrolase BT_0996 · ARA B4 · binds PHE291
- 5MUJ · BT0996 rgii chain B complex · ARA B5 · binds PHE291
- 5MWK · Glycoside hydrolase BT_0986 · ARA B4 · binds TRP276, GLN461, GLU561, HIS569, LYS571
- 6ABP · Sugar-binding and crystallographic studies of an arabinose-binding protein mutant… · ARA A307 · binds LYS10, GLU14, TRP16, ASP90, LEU145, THR147, ARG151, MET204 and 2 more
- 6X8D · Arabinose-bound structure of marinomonas primoryensis PA14 carbohydrate-binding domain · ARA A207 · binds ASP110, ASP111, GLN129, SER130, GLN156, GLY157, GLY158, ASP159
- 7CGQ · Crystal structure of azospirillum brasilense L-arabinose 1- dehydrogenase E147A mutant… · ARA A402 · binds LYS91, HIS119, TRP152, HIS153, ASP169, PRO170, ASN173, TRP231
Residues it binds most
TRP 17, GLY 12, ASN 13, GLU 18, ASP 12, PHE 15, SER 7, THR 9, HIS 7, ILE 7 (residue and the binding sites it lines).
Found with
- CA · Calcium ion
- 8OQ · alpha-D-aceric acid
- 8PK · 4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-alpha-L-fucopyranose
- GAL · beta-D-galactopyranose
- RAM · alpha-L-rhamnopyranose
- FUB · beta-L-arabinofuranose
- NA · Sodium ion
- ACT · Acetate ion
- EDO · 1,2-ethanediol
- ARB · beta-L-arabinopyranose
- BR · Bromide ion
- IOD · Iodide ion
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.