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Ligand · 07D

07D · Trans-geranyl bacteriochlorophyll A

07D, Trans-geranyl bacteriochlorophyll A (C55 H64 Mg N4 O6 +2, 901.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
07D
Formula
C55 H64 Mg N4 O6 +2
Class
ligand
Structures
2
PDB entries
2

Binding sites

07D in 2 structures; the first of them:

  • 7EQD · Structure of photosynthetic LH1-rc super-complex of rhodospirillum rubrum · 07D L301 · binds PHE98, ALA125, ILE126, ALA128, TYR129, LEU132, TRP157, VAL158 and 16 more
  • 7OY8 · Cryo-EM structure of the rhodospirillum rubrum rc-LH1 complex · 07D 11001 · binds PHE31, PHE32, ALA35, HIS39, VAL42, TRP48, TRP40, LEU21 and 11 more

Residues it binds most

LEU 72, PHE 73, ALA 71, VAL 72, TRP 68, HIS 72, ILE 71, THR 8, TYR 6, SER 8 (residue and the binding sites it lines).

Found with

  • CRT · Spirilloxanthin
  • RQ0 · 2-azanyl-5-[(2~{E},6~{E},8~{E},10~{E},12~{E},14~{E}, 18~{E},22~{E},26~{E},30~{E},34~{E})-3,7,11,15,19,23, 27,31,35,39-decamethyltetraconta-2,6,8,10,12,14,18,22, 26,30,34,38-dodecaenyl]-3-methoxy-6-methyl-cyclohexa-2,5-diene-1,4-dione
  • U10 · Ubiquinone-10
  • FE · Fe (III) ion
  • LMT · Dodecyl-beta-D-maltoside
  • 08I · Trans-geranyl bacteriopheophytin A
  • BPH · Bacteriopheophytin A
  • CD4 · (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate
  • CDL · Cardiolipin
  • PEF · Di-palmitoyl-3-sn-phosphatidylethanolamine
  • PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate
  • PGW · (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate

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