MolNFT v2 · #210423 · protein + RNA

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

8G38: “Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate”. Electron microscopy at 3.2, 1 ligand (GTP). MolNFT v2 #210423 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 8G38
Type: protein + RNA
Length: 10,475 residues
Chains: 52
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 3.2
Source: Escherichia coli
UniProt: A0A828UBL8, A0A891SPC3, B7MGC4, E9XJC8, A0A0E2L017, A0A1X3JB59, P60438, A1AGK6, D6IEK6, A0A8E0IYC4, S1EW51, C3SQZ2, A0A037Y8L6, P0ADY7, A0A2T1LEK9, A0A1X3KXD9, S1PSA3, L4J8J1, C3SSG2, P61175, S1EUY1, S1E9P3, D7XH79, C3SSG7, A0A0E2KZD0, D6IEL0, P0AG51, U9ZNW8, V0Y888, C3SR62, F4TL26, P02358, P02359, A0A828U358, V0A2W7, A0A0H3EQD3, P0A7R9, I2UHF1, S1P5F8, A0A090BZT4, D7XN21, C3SYP2, A0A080IK26, W1EY92, A0A7U9LGZ0, C3TRH7, A0A5C9AJ78, A0A2X1MT45, C3SG37
Ligands: GTP

Structure

electron microscopy · resolution 3.2 · 52 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
0	—	protein	56	—	A0A828UBL8
1	—	protein	50	—	A0A891SPC3
2	—	protein	46	—	B7MGC4
3	—	protein	64	—	E9XJC8
4	—	protein	38	—	A0A0E2L017
A	—	rna	117	—	—
B	—	rna	2903	—	—
C	—	protein	271	—	A0A1X3JB59
D	—	protein	209	—	P60438
E	—	protein	201	—	A1AGK6
F	—	protein	178	—	D6IEK6
G	—	protein	176	—	A0A8E0IYC4
J	—	protein	142	—	S1EW51
K	—	protein	121	—	C3SQZ2
L	—	protein	143	—	A0A037Y8L6
M	—	protein	136	—	P0ADY7
N	—	protein	120	—	A0A2T1LEK9
O	—	protein	116	—	A0A1X3KXD9
P	—	protein	114	—	S1PSA3
Q	—	protein	117	—	L4J8J1
R	—	protein	103	—	C3SSG2
S	—	protein	110	—	P61175
T	—	protein	93	—	S1EUY1
U	—	protein	102	—	S1E9P3
V	—	protein	94	—	D7XH79
W	—	protein	79	—	C3SSG7
X	—	protein	77	—	A0A0E2KZD0
Y	—	protein	63	—	D6IEL0
Z	—	protein	58	—	P0AG51
w	—	protein	218	—	U9ZNW8
x	—	protein	206	—	V0Y888
c	—	protein	205	—	C3SR62
d	—	protein	150	—	F4TL26
e	—	protein	100	—	P02358
f	—	protein	151	—	P02359
g	—	protein	129	—	A0A828U358
h	—	protein	127	—	V0A2W7
i	—	protein	98	—	A0A0H3EQD3
j	—	protein	117	—	P0A7R9
k	—	protein	123	—	I2UHF1
l	—	protein	114	—	S1P5F8
m	—	protein	96	—	A0A090BZT4
n	—	protein	88	—	D7XN21
o	—	protein	82	—	C3SYP2
p	—	protein	80	—	A0A080IK26
q	—	protein	55	—	W1EY92
r	—	protein	79	—	A0A7U9LGZ0
s	—	protein	85	—	C3TRH7
t	—	protein	51	—	A0A5C9AJ78
u	—	protein	59	—	A0A2X1MT45
v	—	rna	1539	—	—
6	—	protein	426	—	C3SG37

Ligands and binding sites

GTP · Guanosine-5'-triphosphate · ligand · chains 6

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

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