MolNFT v2 · #171273 · protein + DNA
Two mouse cGAS catalytic domain binding to human assembled nucleosome
6XJD: “Two mouse cGAS catalytic domain binding to human assembled nucleosome”. Electron microscopy at 6.8, 1 ligand (ZN). MolNFT v2 #171273 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XJD
- Type
- protein + DNA
- Length
- 1,775 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 6.8
- Source
- Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
- UniProt
- Q71DI3, P62805, P0C0S8, P62807, Q8C6L5
- Ligands
- ZN
Structure
electron microscopy · resolution 6.8 · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | — | protein | 98 | — | Q71DI3 |
| B | — | protein | 80 | — | P62805 |
| C | — | protein | 108 | — | P0C0S8 |
| D | — | protein | 95 | — | P62807 |
| F | — | protein | 81 | — | P62805 |
| G | — | protein | 107 | — | P0C0S8 |
| H | — | protein | 94 | — | P62807 |
| I | — | dna | 145 | — | — |
| J | — | dna | 145 | — | — |
| K, L | — | protein | 362 | — | Q8C6L5 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains K, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XJD · Two mouse cgas catalytic domain binding to human assembled nucleosome · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q71DI3
- Every structure of UniProt P62805
- Every structure of UniProt P0C0S8
- Every structure of UniProt P62807
- Every structure of UniProt Q8C6L5
- Elsewhere: RCSB PDB 6XJD · PDBe 6XJD · UniProt Q71DI3 · UniProt P62805 · UniProt P0C0S8 · UniProt P62807 · UniProt Q8C6L5
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