MolNFT v2 · #155027 · protein
Rb+-bound E2-MgF state of the gastric proton pump (Wild-type)
6JXK: “Rb+-bound E2-MgF state of the gastric proton pump (Wild-type)”. X-ray diffraction at 4.3, 5 ligands (MF4, CLR, NAG). MolNFT v2 #155027 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JXK
- Type
- protein
- Length
- 2,511 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 4.3
- Source
- Sus scrofa
- UniProt
- P19156, P18434
- Ligands
- MF4, CLR, NAG, K, MG
Structure
x-ray diffraction · resolution 4.3 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | — | protein | 987 | — | P19156 |
| B | — | protein | 271 | — | P18434 |
| F | — | protein | 266 | — | P18434 |
Ligands and binding sites
- MF4 · Tetrafluoromagnesate(2-) · ligand · 2 copies · chains A, E
- CLR · Cholesterol · ligand · 2 copies · chains A, B, F, E
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains B, F
- K · Potassium ion · metal · 6 copies · chains A, E
- MG · Magnesium ion · metal · 2 copies · chains A, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JXK · Rb+-bound E2-mgf state of the gastric proton pump (wild-type) · the same entry in another collection · chain F against F, TM-score 1.00
- P19156 · AlphaFold monomer V2.0 prediction for potassium-transporting ATPase alpha chain 1 (P19156) · a predicted model of the same protein · chain A against A, TM-score 0.99
- P18434 · AlphaFold monomer V2.0 prediction for potassium-transporting ATPase subunit beta (P18434) · a predicted model of the same protein · chain F against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19156
- Every structure of UniProt P18434
- Elsewhere: RCSB PDB 6JXK · PDBe 6JXK · UniProt P19156 · UniProt P18434
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