MolNFT v2 · #138769 · protein
Yeast tubulin polymerized with GTP in vitro
5W3F: “Yeast tubulin polymerized with GTP in vitro”. Electron microscopy at 3.7, 3 ligands (GTP, GDP, MG). MolNFT v2 #138769 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5W3F
- Type
- protein
- Length
- 867 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.7
- Source
- Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
- UniProt
- P09733, P02557
- Ligands
- GTP, GDP, MG
Structure
electron microscopy · resolution 3.7 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 440 | — | P09733 |
| B | — | protein | 427 | — | P02557 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · chains A, B
- GDP · Guanosine-5'-diphosphate · ligand · chains B
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5W3F · Yeast tubulin polymerized with GTP in vitro · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09733
- Every structure of UniProt P02557
- Elsewhere: RCSB PDB 5W3F · PDBe 5W3F · UniProt P09733 · UniProt P02557
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