MolNFT v2 · #129985 · protein
Complex of human nuclear cap-binding complex with M7GTP and nelf-E C-terminal peptide
5OOB: “Complex of human nuclear cap-binding complex with M7GTP and nelf-E C-terminal peptide”. X-ray diffraction at 2.79, 1 ligand (MGT). MolNFT v2 #129985 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OOB
- Type
- protein
- Length
- 3,566 residues
- Chains
- 11
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.79
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- Q09161, P52298, P18615
- Ligands
- MGT
Structure
x-ray diffraction · resolution 2.79 · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 739 | — | Q09161 |
| B | — | protein | 152 | — | P52298 |
| C | — | protein | 731 | — | Q09161 |
| D | — | protein | 151 | — | P52298 |
| E | — | protein | 18 | — | P18615 |
| F | — | protein | 718 | — | Q09161 |
| G | — | protein | 149 | — | P52298 |
| I | — | protein | 729 | — | Q09161 |
| J | — | protein | 148 | — | P52298 |
| K | — | protein | 17 | — | P18615 |
| Z | — | protein | 14 | — | P18615 |
Ligands and binding sites
- MGT · 7N-methyl-8-hydroguanosine-5'-triphosphate · ligand · 4 copies · chains B, D, G, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OOB · Complex of human nuclear cap-binding complex with M7GTP and nelf-E C- terminal peptide · the same entry in another collection · chain Z against Z, TM-score 1.00
- Q09161 · AlphaFold monomer V2.0 prediction for nuclear cap-binding protein subunit 1 (Q09161) · a predicted model of the same protein · chain F against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q09161
- Every structure of UniProt P52298
- Every structure of UniProt P18615
- Elsewhere: RCSB PDB 5OOB · PDBe 5OOB · UniProt Q09161 · UniProt P52298 · UniProt P18615
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