MolNFT v2 · #120822 · protein
A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 40 ns after photoexcitation
5H2H: “A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 40 ns after…”. X-ray diffraction at 2.1, 7 ligands (L2P, MYS, RET). MolNFT v2 #120822 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5H2H
- Type
- protein
- Length
- 231 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.1
- Source
- Halobacterium salinarum NRC-1
- UniProt
- P02945
- Ligands
- L2P, MYS, RET, TRD, D10, HP6, C14
Structure
x-ray diffraction · resolution 2.1 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 231 | — | P02945 |
Ligands and binding sites
- L2P · 2,3-di-phytanyl-glycerol · ligand · 3 copies · chains A
- MYS · Pentadecane · ligand · 2 copies · chains A
- RET · Retinal · ligand · chains A
- TRD · Tridecane · ligand · chains A
- D10 · Decane · ligand · chains A
- HP6 · Heptane · ligand
- C14 · Tetradecane · ligand · chains A
- OCT · N-octane · additive · 3 copies · chains A
- UND · Undecane · additive · 2 copies · chains A
- DD9 · nonane · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5H2H · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · the same entry in another collection · chain A against A, TM-score 1.00
- P02945 · AlphaFold monomer V2.0 prediction for bacteriorhodopsin (P02945) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02945
- Elsewhere: RCSB PDB 5H2H · PDBe 5H2H · UniProt P02945
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