MolNFT v2 · #119315 · protein + DNA + RNA
Cryo-EM structure of yeast RNA polymerase III elongation complex at 3. 9 A
5FJ8: “Cryo-EM structure of yeast RNA polymerase III elongation complex at 3. 9 A”. Electron microscopy at 3.9, 1 ligand (ZN). MolNFT v2 #119315 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5FJ8
- Type
- protein + DNA + RNA
- Length
- 4,886 residues
- Chains
- 20
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.9
- Source
- SACCHAROMYCES CEREVISIAE; SYNTHETIC CONSTRUCT
- UniProt
- P04051, P22276, P07703, P47076, P20434, P20435, P35718, P20436, Q04307, P22139, P28000, P40422, P36121, P25441, P32349, P32910, P17890
- Ligands
- ZN
Structure
electron microscopy · resolution 3.9 · 20 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1422 | — | P04051 |
| B | — | protein | 1114 | — | P22276 |
| C | — | protein | 335 | — | P07703 |
| D | — | protein | 119 | — | P47076 |
| E | — | protein | 215 | — | P20434 |
| F | — | protein | 83 | — | P20435 |
| G | — | protein | 191 | — | P35718 |
| H | — | protein | 140 | — | P20436 |
| I | — | protein | 42 | — | Q04307 |
| J | — | protein | 67 | — | P22139 |
| K | — | protein | 101 | — | P28000 |
| L | — | protein | 45 | — | P40422 |
| M | — | protein | 164 | — | P36121 |
| N | — | protein | 110 | — | P25441 |
| O | — | protein | 539 | — | P32349 |
| P | — | protein | 89 | — | P32910 |
| Q | — | protein | 63 | — | P17890 |
| R | — | dna | 23 | — | — |
| S | — | dna | 15 | — | — |
| T | — | rna | 9 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 6 copies · chains A, B, I, J, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5FJ8 · Cryo-EM structure of yeast RNA polymerase III elongation complex at 3. 9 a · the same entry in another collection · chain T against T, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04051
- Every structure of UniProt P22276
- Every structure of UniProt P07703
- Every structure of UniProt P47076
- Every structure of UniProt P20434
- Every structure of UniProt P20435
- Every structure of UniProt P35718
- Every structure of UniProt P20436
- Every structure of UniProt Q04307
- Every structure of UniProt P22139
- Every structure of UniProt P28000
- Every structure of UniProt P40422
- Every structure of UniProt P36121
- Every structure of UniProt P25441
- Every structure of UniProt P32349
- Every structure of UniProt P32910
- Every structure of UniProt P17890
- Elsewhere: RCSB PDB 5FJ8 · PDBe 5FJ8 · UniProt P04051 · UniProt P22276 · UniProt P07703 · UniProt P47076 · UniProt P20434 · UniProt P20435 · UniProt P35718 · UniProt P20436 · UniProt Q04307 · UniProt P22139 · UniProt P28000 · UniProt P40422 · UniProt P36121 · UniProt P25441 · UniProt P32349 · UniProt P32910 · UniProt P17890
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