MolNFT v1 · #190941 · protein
The barbed end complex of dynactin bound to BICDR1 and the cytoplasmic dynein tails (A2, B1, B2)
7Z8I: “The barbed end complex of dynactin bound to BICDR1 and the cytoplasmic dynein tails (A2, B1, B2)”. Electron microscopy, 2 ligands (ADP, MG). MolNFT v1 #190941 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Z8I
- Type
- protein
- Length
- 5,372 residues
- Chains
- 17
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F2Z5G5, A0PFK5, A9XFX6, A0JNT9, Q14204, Q13409, O43237
- Ligands
- ADP, MG
Structure
electron microscopy · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D, E | — | protein | 370 | — | F2Z5G5 |
| C | — | protein | 375 | — | F2Z5G5 |
| F | — | protein | 279 | — | F2Z5G5 |
| K | — | protein | 278 | — | A0PFK5 |
| L | — | protein | 269 | — | A9XFX6 |
| X, x | — | protein | 93 | — | A0JNT9 |
| f | — | protein | 720 | — | Q14204 |
| h, o | — | protein | 358 | — | Q13409 |
| j | — | protein | 44 | — | O43237 |
| m | — | protein | 602 | — | Q14204 |
| n | — | protein | 409 | — | Q14204 |
| r | — | protein | 14 | — | O43237 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 6 copies · chains A, B, C, D, E, F
- MG · Magnesium ion · metal · 6 copies · chains A, B, C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q13409 · AlphaFold monomer V2.0 prediction for cytoplasmic dynein 1 intermediate chain 2 (Q13409) · a predicted model of the same protein · chain o against A, TM-score 0.99
- A0JNT9 · AlphaFold monomer V2.0 prediction for bicd family-like cargo adapter 1 (A0JNT9) · a predicted model of the same protein · chain x against A, TM-score 0.90
- O43237 · AlphaFold monomer V2.0 prediction for cytoplasmic dynein 1 light intermediate chain 2… · a predicted model of the same protein · chain r against A, TM-score 0.73
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2Z5G5
- Every structure of UniProt A0PFK5
- Every structure of UniProt A9XFX6
- Every structure of UniProt A0JNT9
- Every structure of UniProt Q14204
- Every structure of UniProt Q13409
- Every structure of UniProt O43237
- Elsewhere: RCSB PDB 7Z8I · PDBe 7Z8I · UniProt F2Z5G5 · UniProt A0PFK5 · UniProt A9XFX6 · UniProt A0JNT9 · UniProt Q14204 · UniProt Q13409 · UniProt O43237
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