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MolNFT v1 · #190318 · protein

Cryo-EM structure of the adhesion GPCR ADGRF1 in complex with minigs

7WU3: “Cryo-EM structure of the adhesion GPCR ADGRF1 in complex with minigs”. Electron microscopy, 1 ligand (K6G). MolNFT v1 #190318 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7WU3
Type
protein
Length
1,013 residues
Chains
5
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P62873, P59768, Q5T601
Ligands
K6G

Structure

electron microscopy · 5 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein211——
B—protein339—P62873
C—protein56—P59768
N—protein127——
R—protein280—Q5T601

Ligands and binding sites

  • K6G · [(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] hexadecanoate · ligand · chains R

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7WU3 · Cryo-EM structure of the adhesion GPCR ADGRF1 in complex with miniGs · the same entry in another collection · chain R against R, TM-score 1.00
  • P62873 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(T)… · a predicted model of the same protein · chain B against A, TM-score 0.99
  • P59768 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(O)… · a predicted model of the same protein · chain C against A, TM-score 0.92
  • Q5T601 · AlphaFold monomer V2.0 prediction for adhesion G-protein coupled receptor F1 (Q5T601) · a predicted model of the same protein · chain R against A, TM-score 0.83

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