MolNFT v1 · #187094 · protein

Structures of tcdb in complex with CDC42

7S0Y: “Structures of tcdb in complex with CDC42”. X-ray diffraction, 5 ligands (UDP, GDP, MN). MolNFT v1 #187094 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7S0Y
Type: protein
Length: 722 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P18177, P60953
Ligands: UDP, GDP, MN, MG, SO4

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	542	—	P18177
B	—	protein	180	—	P60953

Ligands and binding sites

UDP · Uridine-5'-diphosphate · ligand · chains A, B
GDP · Guanosine-5'-diphosphate · ligand · chains B
MN · Manganese (II) ion · metal · chains A
MG · Magnesium ion · metal · chains A, B
SO4 · Sulfate ion · ion · 11 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7S0Y · Structures of TcdB in complex with Cdc42 · the same entry in another collection · chain A against A, TM-score 1.00
P60953 · AlphaFold monomer V2.0 prediction for cell division control protein 42 homolog (P60953) · a predicted model of the same protein · chain B against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P18177
Every structure of UniProt P60953
Elsewhere: RCSB PDB 7S0Y · PDBe 7S0Y · UniProt P18177 · UniProt P60953

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