MolNFT v1 · #186648 · protein
Binding mode of US27-gi-SCFV16 in ocl-state
7RKY: “Binding mode of US27-gi-SCFV16 in ocl-state”. Electron microscopy, 1 ligand (GDP). MolNFT v1 #186648 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7RKY
- Type
- protein
- Length
- 1,219 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P63096, P62873, P59768, P09703
- Ligands
- GDP
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 341 | — | P63096 |
| B | — | protein | 338 | — | P62873 |
| C | — | protein | 55 | — | P59768 |
| D | — | protein | 233 | — | — |
| R | — | protein | 252 | — | P09703 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7RKY · Binding mode of US27-Gi-scFv16 in OCL-state · the same entry in another collection · chain R against R, TM-score 1.00
- P62873 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(T)… · a predicted model of the same protein · chain B against A, TM-score 0.99
- P63096 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I) subunit… · a predicted model of the same protein · chain A against A, TM-score 0.89
- P59768 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(O)… · a predicted model of the same protein · chain C against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63096
- Every structure of UniProt P62873
- Every structure of UniProt P59768
- Every structure of UniProt P09703
- Elsewhere: RCSB PDB 7RKY · PDBe 7RKY · UniProt P63096 · UniProt P62873 · UniProt P59768 · UniProt P09703
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