MolNFT v1 · #184108 · protein

Crystal structure of TD1-mebendazole complex

7ODN: “Crystal structure of TD1-mebendazole complex”. X-ray diffraction, 6 ligands (GTP, GDP, V95). MolNFT v1 #184108 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7ODN
Type: protein
Length: 1,007 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P81947, Q2T9S0
Ligands: GTP, GDP, V95, MG, SO4, CL

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	426	—	P81947
B	—	protein	426	—	Q2T9S0
F	—	protein	155	—	—

Ligands and binding sites

GTP · Guanosine-5'-triphosphate · ligand · chains A, B
GDP · Guanosine-5'-diphosphate · ligand · chains B
V95 · methyl N-(6-benzoyl-1H-benzimidazol-2-yl)carbamate · ligand · chains B
MG · Magnesium ion · metal · chains B
SO4 · Sulfate ion · ion · 5 copies · chains A, B, F
CL · Chloride ion · ion · 2 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains B, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7ODN · Crystal structure of TD1-mebendazole complex · the same entry in another collection · chain A against A, TM-score 1.00
Q2T9S0 · AlphaFold monomer V2.0 prediction for tubulin beta-3 chain (Q2T9S0) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P81947
Every structure of UniProt Q2T9S0
Elsewhere: RCSB PDB 7ODN · PDBe 7ODN · UniProt P81947 · UniProt Q2T9S0

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