MolNFT v1 · #18090 · DNA
PD235, pna-DNA duplex, NMR, 8 structures
1PDT · DNA (5'-D(*GP*AP*CP*AP*TP*AP*GP*C)-3': “PD235, pna-DNA duplex, NMR, 8 structures”. Solution nmr, 5 ligands (TPN, GPN, CPN). MolNFT v1 #18090 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1PDT
- Type
- DNA
- Length
- 8 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*AP*CP*AP*TP*AP*GP*C)-3'
- Ligands
- TPN, GPN, CPN, APN, NH2
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*GP*AP*CP*AP*TP*AP*GP*C)-3' | dna | 8 | — | — |
Ligands and binding sites
- TPN · 2-aminoethylglycine-carbonylmethylene-thymine · ligand · 3 copies · chains A
- GPN · 2-aminoethylglycine-carbonylmethylene-guanine · ligand · 2 copies · chains A
- CPN · 2-aminoethylglycine-carbonylmethylene-cytosine · ligand · 2 copies · chains A
- APN · 2-aminoethylglycine-carbonylmethylene-adenine · ligand · chains A
- NH2 · Amino group · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1PDT · PD235, pna-DNA duplex, NMR, 8 structures · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1PDT · PDBe 1PDT
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