MolNFT v1 · #180710 · protein
Integrin ALPHAIIBBETA3 in complex with sibrafiban
7L8P: “Integrin ALPHAIIBBETA3 in complex with sibrafiban”. X-ray diffraction, 8 ligands (XQS, NAG, MAN). MolNFT v1 #180710 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7L8P
- Type
- protein
- Length
- 2,702 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P08514, P05106
- Ligands
- XQS, NAG, MAN, BMA, CA, MG, SO4, CL
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 454 | — | P08514 |
| B | — | protein | 466 | — | P05106 |
| C | — | protein | 453 | — | P08514 |
| D | — | protein | 471 | — | P05106 |
| E | — | protein | 214 | — | — |
| F, L | — | protein | 214 | — | — |
| H | — | protein | 216 | — | — |
Ligands and binding sites
- XQS · sibrafiban (active form) · ligand · 2 copies · chains A, B, C, D
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 10 copies · chains A, B, C, D
- MAN · alpha-D-mannopyranose · sugar · 3 copies · chains A, C
- BMA · beta-D-mannopyranose · sugar · 2 copies
- CA · Calcium ion · metal · 12 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 2 copies · chains B, D
- SO4 · Sulfate ion · ion · 7 copies · chains A, C, L
- CL · Chloride ion · ion · 2 copies · chains C
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L8P · Integrin alphaIIbbeta3 in complex with sibrafiban · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08514
- Every structure of UniProt P05106
- Elsewhere: RCSB PDB 7L8P · PDBe 7L8P · UniProt P08514 · UniProt P05106
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