MolNFT v1 · #179732 · protein + DNA + RNA
RNA polymerase II elongation complex with unnatural base DTPT3, rnamtp bound to E-site
7KEE: “RNA polymerase II elongation complex with unnatural base DTPT3, rnamtp bound to E-site”. X-ray diffraction, 3 ligands (WCG, ZN, MG). MolNFT v1 #179732 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KEE
- Type
- protein + DNA + RNA
- Length
- 3,582 residues
- Chains
- 13
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P04050, P08518, P16370, P20434, P20435, P20436, P27999, P22139, P38902, P40422
- Ligands
- WCG, ZN, MG
Structure
x-ray diffraction · 13 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1390 | — | P04050 |
| B | — | protein | 1106 | — | P08518 |
| C | — | protein | 266 | — | P16370 |
| E | — | protein | 214 | — | P20434 |
| F | — | protein | 84 | — | P20435 |
| H | — | protein | 133 | — | P20436 |
| I | — | protein | 119 | — | P27999 |
| J | — | protein | 65 | — | P22139 |
| K | — | protein | 114 | — | P38902 |
| L | — | protein | 46 | — | P40422 |
| R | — | rna | 10 | — | — |
| T | — | dna | 24 | — | — |
| N | — | dna | 11 | — | — |
Ligands and binding sites
- WCG · (1S)-1,4-anhydro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-1-(3-methoxynaphthalen-2-yl)-D-ribitol · ligand · chains A, B
- ZN · Zinc ion · metal · 8 copies · chains A, B, C, I, J, L
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KEE · RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04050
- Every structure of UniProt P08518
- Every structure of UniProt P16370
- Every structure of UniProt P20434
- Every structure of UniProt P20435
- Every structure of UniProt P20436
- Every structure of UniProt P27999
- Every structure of UniProt P22139
- Every structure of UniProt P38902
- Every structure of UniProt P40422
- Elsewhere: RCSB PDB 7KEE · PDBe 7KEE · UniProt P04050 · UniProt P08518 · UniProt P16370 · UniProt P20434 · UniProt P20435 · UniProt P20436 · UniProt P27999 · UniProt P22139 · UniProt P38902 · UniProt P40422
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.