MolNFT v1 · #169736 · protein + DNA + RNA
Cryo-EM structure of E. COLI rnap-promoter initial transcribing complex with 5-nt RNA transcript (rpitc-5NT)
6XLL: “Cryo-EM structure of E. COLI rnap-promoter initial transcribing complex with 5-nt RNA transcript (rpitc-5NT)”. Electron microscopy, 3 ligands (1N7, ZN, MG). MolNFT v1 #169736 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6XLL
- Type
- protein + DNA + RNA
- Length
- 3,786 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A7Z6, B7MIX3, P0A8T8, B7MFL0, P00579
- Ligands
- 1N7, ZN, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 231 | — | P0A7Z6 |
| B | — | protein | 222 | — | P0A7Z6 |
| C | — | protein | 1339 | — | B7MIX3 |
| D | — | protein | 1336 | — | P0A8T8 |
| E | — | protein | 79 | — | B7MFL0 |
| F | — | protein | 476 | — | P00579 |
| N | — | dna | 50 | — | — |
| T | — | dna | 48 | — | — |
| R | — | rna | 5 | — | — |
Ligands and binding sites
- 1N7 · Chapso · ligand · 2 copies · chains C, A
- ZN · Zinc ion · metal · 2 copies · chains D
- MG · Magnesium ion · metal · chains D, R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XLL · Cryo-EM structure of E. coli RNAP-promoter initial transcribing complex with 5-nt RNA… · the same entry in another collection · chain R against R, TM-score 1.00
- B7MIX3 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (B7MIX3) · a predicted model of the same protein · chain C against A, TM-score 0.99
- P0A7Z6 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha (P0A7Z6) · a predicted model of the same protein · chain B against A, TM-score 0.96
- B7MFL0 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (B7MFL0) · a predicted model of the same protein · chain E against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A7Z6
- Every structure of UniProt B7MIX3
- Every structure of UniProt P0A8T8
- Every structure of UniProt B7MFL0
- Every structure of UniProt P00579
- Elsewhere: RCSB PDB 6XLL · PDBe 6XLL · UniProt P0A7Z6 · UniProt B7MIX3 · UniProt P0A8T8 · UniProt B7MFL0 · UniProt P00579
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.