MolNFT v1 · #168709 · protein + DNA + RNA
Thermus thermophilus RNA polymerase initially transcribing complex with 2'DCTP
6WOX: “Thermus thermophilus RNA polymerase initially transcribing complex with 2'DCTP”. X-ray diffraction, 4 ligands (DCP, ZN, NA). MolNFT v1 #168709 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6WOX
- Type
- protein + DNA + RNA
- Length
- 3,531 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9Z9H6, Q8RQE9, Q8RQE8, A0A1J1EUF1, Q72L95
- Ligands
- DCP, ZN, NA, MG
Structure
x-ray diffraction · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 226 | — | Q9Z9H6 |
| B | — | protein | 224 | — | Q9Z9H6 |
| C | — | protein | 1111 | — | Q8RQE9 |
| D | — | protein | 1485 | — | Q8RQE8 |
| E | — | protein | 94 | — | A0A1J1EUF1 |
| F | — | protein | 346 | — | Q72L95 |
| G | — | dna | 17 | — | — |
| H | — | dna | 25 | — | — |
| I | — | rna | 3 | — | — |
Ligands and binding sites
- DCP · 2'-deoxycytidine-5'-triphosphate · ligand · chains C, D, G, I
- ZN · Zinc ion · metal · 2 copies · chains D
- NA · Sodium ion · metal · chains C, D
- MG · Magnesium ion · metal · chains D, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6WOX · Thermus thermophilus RNA polymerase initially transcribing complex with 2'dCTP · the same entry in another collection · chain I against I, TM-score 1.00
- Q72L95 · AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor siga (Q72L95) · a predicted model of the same protein · chain F against A, TM-score 0.97
- Q9Z9H6 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha (Q9Z9H6) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Z9H6
- Every structure of UniProt Q8RQE9
- Every structure of UniProt Q8RQE8
- Every structure of UniProt A0A1J1EUF1
- Every structure of UniProt Q72L95
- Elsewhere: RCSB PDB 6WOX · PDBe 6WOX · UniProt Q9Z9H6 · UniProt Q8RQE9 · UniProt Q8RQE8 · UniProt A0A1J1EUF1 · UniProt Q72L95
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