MolNFT v1 · #167807 · protein + DNA
Mycobacterium tuberculosis wt rnap transcription open promoter complex with sorangicin
6VVY: “Mycobacterium tuberculosis wt rnap transcription open promoter complex with sorangicin”. Electron microscopy, 3 ligands (SRN, ZN, MG). MolNFT v1 #167807 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VVY
- Type
- protein + DNA
- Length
- 3,646 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A5U8D3, V9Z879, A5U053, A0A0T9N9K3, P9WGI0, P9WHJ4, P9WJG2
- Ligands
- SRN, ZN, MG
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 225 | — | A5U8D3 |
| B | — | protein | 237 | — | A5U8D3 |
| C | — | protein | 1111 | — | V9Z879 |
| D | — | protein | 1270 | — | A5U053 |
| E | — | protein | 83 | — | A0A0T9N9K3 |
| F | — | protein | 322 | — | P9WGI0 |
| J | — | protein | 109 | — | P9WHJ4 |
| O | — | dna | 65 | — | — |
| P | — | dna | 65 | — | — |
| M | — | protein | 159 | — | P9WJG2 |
Ligands and binding sites
- SRN · Sorangicin A · ligand · chains C, F
- ZN · Zinc ion · metal · 2 copies · chains D
- MG · Magnesium ion · metal · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VVY · Mycobacterium tuberculosis WT RNAP transcription open promoter complex with Sorangicin · the same entry in another collection · chain M against M, TM-score 1.00
- P9WJG2 · AlphaFold monomer V2.0 prediction for RNA polymerase-binding transcription factor card… · a predicted model of the same protein · chain M against A, TM-score 0.94
- A5U053 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta' (A5U053) · a predicted model of the same protein · chain D against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5U8D3
- Every structure of UniProt V9Z879
- Every structure of UniProt A5U053
- Every structure of UniProt A0A0T9N9K3
- Every structure of UniProt P9WGI0
- Every structure of UniProt P9WHJ4
- Every structure of UniProt P9WJG2
- Elsewhere: RCSB PDB 6VVY · PDBe 6VVY · UniProt A5U8D3 · UniProt V9Z879 · UniProt A5U053 · UniProt A0A0T9N9K3 · UniProt P9WGI0 · UniProt P9WHJ4 · UniProt P9WJG2
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