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Ligand · SRN

SRN · Sorangicin A

SRN, Sorangicin A (C47 H66 O11, 807.0 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
SRN
Formula
C47 H66 O11
Class
ligand
Structures
8
PDB entries
5

Binding sites

SRN in 8 structures; the first of them:

  • 6VVS · Crystal structure of a Mycobacterium smegmatis RNA polymerase transcription initiation… · SRN C1205 · binds VAL167, GLN426, GLN429, PHE430, ASP432, HIS442, ARG445, SER447 and 9 more
  • 6VVT · Crystal structure of a Mycobacterium smegmatis transcription initiation complex with… · SRN C1201 · binds VAL167, SER425, GLN426, LEU427, SER428, GLN429, PHE430, ASP432 and 9 more
  • 6VVZ · Mycobacterium tuberculosis RNAP S456L mutant transcription initiation intermediate… · SRN C1201 · binds ARG173, VAL176, SER434, GLN435, SER437, GLN438, PHE439, ASP441 and 9 more
  • 6VVS · Crystal structure of a mycobacterium smegmatis RNA polymerase transcription initiation… · SRN C1205 · binds VAL167, GLN426, GLN429, PHE430, ASP432, HIS442, ARG445, SER447 and 9 more
  • 6VVT · Crystal structure of a mycobacterium smegmatis transcription initiation complex with… · SRN C1201 · binds VAL167, GLN426, SER428, GLN429, PHE430, ASP432, THR441, HIS442 and 6 more
  • 6VVX · Mycobacterium tuberculosis wt rnap transcription initiation intermediate structure with… · SRN C1201 · binds VAL176, SER434, GLN435, GLN438, PHE439, ASP441, HIS451, ARG454 and 7 more
  • 6VVY · Mycobacterium tuberculosis wt rnap transcription open promoter complex with sorangicin · SRN C1201 · binds VAL176, GLN435, LEU436, GLN438, PHE439, ASP441, THR450, HIS451 and 8 more
  • 6VVZ · Mycobacterium tuberculosis rnap S456L mutant transcription initiation intermediate… · SRN C1201 · binds ARG173, VAL176, SER434, GLN435, SER437, GLN438, PHE439, ASP441 and 9 more

Residues it binds most

ARG 8, GLN 8, HIS 8, SER 8, ASP 8, LEU 8, ASN 8, ILE 8, PHE 8, PRO 8 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • MG · Magnesium ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol

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