MolNFT v1 · #165276 · protein + RNA

RNase M5 bound to 50S ribosome with precursor 5S rRNA

6TPQ: “RNase M5 bound to 50S ribosome with precursor 5S rRNA”. Electron microscopy, 2 ligands (MG, ZN). MolNFT v1 #165276 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6TPQ
Type: protein + RNA
Length: 6,393 residues
Chains: 31
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A0A087LGV4, P42923, P42919, P42920, P42921, P12877, P46898, P70974, P12875, P19946, P14577, P20277, P46899, O31742, P55873, P26908, P42060, P42924, P0CI78, P05657, O34687, P56849, P05647, P55874, P20278, P37807, P12873, P19947
Ligands: MG, ZN

Structure

electron microscopy · 31 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	—	protein	183	—	A0A087LGV4
V	—	rna	123	—	—
A	—	protein	69	—	A0A087LGV4
b	—	protein	123	—	P42923
U	—	rna	2924	—	—
W	—	protein	275	—	P42919
X	—	protein	207	—	P42920
Y	—	protein	205	—	P42921
Z	—	protein	178	—	P12877
a	—	protein	175	—	P46898
c	—	protein	142	—	P70974
d	—	protein	122	—	P12875
e	—	protein	146	—	P19946
f	—	protein	138	—	P14577
g	—	protein	119	—	P20277
h	—	protein	120	—	P46899
i	—	protein	114	—	O31742
j	—	protein	117	—	P55873
k	—	protein	101	—	P26908
l	—	protein	109	—	P42060
m	—	protein	93	—	P42924
n	—	protein	101	—	P0CI78
o	—	protein	82	—	P05657
p	—	protein	54	—	O34687
q	—	protein	48	—	P56849
r	—	protein	44	—	P05647
s	—	protein	64	—	P55874
t	—	protein	36	—	P20278
u	—	protein	58	—	P37807
v	—	protein	65	—	P12873
w	—	protein	58	—	P19947

Ligands and binding sites

MG · Magnesium ion · metal · 219 copies · chains V, U, e, W, u
ZN · Zinc ion · metal · 3 copies · chains p, q, t

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6TPQ · RNase M5 bound to 50S ribosome with precursor 5S rRNA · the same entry in another collection · chain c against c, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A087LGV4
Every structure of UniProt P42923
Every structure of UniProt P42919
Every structure of UniProt P42920
Every structure of UniProt P42921
Every structure of UniProt P12877
Every structure of UniProt P46898
Every structure of UniProt P70974
Every structure of UniProt P12875
Every structure of UniProt P19946
Every structure of UniProt P14577
Every structure of UniProt P20277
Every structure of UniProt P46899
Every structure of UniProt O31742
Every structure of UniProt P55873
Every structure of UniProt P26908
Every structure of UniProt P42060
Every structure of UniProt P42924
Every structure of UniProt P0CI78
Every structure of UniProt P05657
Every structure of UniProt O34687
Every structure of UniProt P56849
Every structure of UniProt P05647
Every structure of UniProt P55874
Every structure of UniProt P20278
Every structure of UniProt P37807
Every structure of UniProt P12873
Every structure of UniProt P19947
Elsewhere: RCSB PDB 6TPQ · PDBe 6TPQ · UniProt A0A087LGV4 · UniProt P42923 · UniProt P42919 · UniProt P42920 · UniProt P42921 · UniProt P12877 · UniProt P46898 · UniProt P70974 · UniProt P12875 · UniProt P19946 · UniProt P14577 · UniProt P20277 · UniProt P46899 · UniProt O31742 · UniProt P55873 · UniProt P26908 · UniProt P42060 · UniProt P42924 · UniProt P0CI78 · UniProt P05657 · UniProt O34687 · UniProt P56849 · UniProt P05647 · UniProt P55874 · UniProt P20278 · UniProt P37807 · UniProt P12873 · UniProt P19947

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.