UniProt P12877
50S ribosomal protein L5 (P12877)
50S ribosomal protein L5 (UniProt P12877): 22 experimental structures and 1 predicted model on GenesisL1, 10 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P12877
- Protein
- 50S ribosomal protein L5
- Experimental structures
- 22
- Predicted models
- 1
- Pockets
- 10 · 8 records with a druggable one
Structures
23 records of P12877 in the MolNFT archive: 22 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3J3V | Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a) | electron microscopy | F | — | — |
| 3J3V | Atomic model of the immature 50S subunit from bacillus subtilis (state I-a) | electron microscopy | F | — | — |
| 3J9W | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | electron microscopy | BG | — | — |
| 5NJT | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | electron microscopy | Z | — | — |
| 6HA1 | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in… | electron microscopy | F | — | — |
| 6HA8 | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | electron microscopy | F | — | — |
| 6HTQ | Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome | electron microscopy | F | — | — |
| 6TNN | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | electron microscopy | Z | — | 2 (best 0.82) |
| 6TNN | Mini-RNase III (mini-III) bound to 50S ribosome with precursor 23S rRNA | electron microscopy | Z | — | — |
| 6TPQ | RNase M5 bound to 50S ribosome with precursor 5S rRNA | electron microscopy | Z | — | — |
| 7AQC | Structure of the bacterial rqc complex (decoding state) | electron microscopy | F | — | — |
| 7AQD | Structure of the bacterial RQC complex (Translocating State) | electron microscopy | F | — | 1 (best 0.82) |
| 7AQD | Structure of the bacterial rqc complex (translocating state) | electron microscopy | F | — | — |
| 7AS8 | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA… | electron microscopy | H | — | 1 (best 0.83) |
| 7AS8 | Bacillus subtilis ribosome quality control complex state B. ribosomal 50S subunit with P-tRNA… | electron microscopy | H | — | — |
| 7AS9 | Bacillus subtilis ribosome-associated quality control complex state a. ribosomal 50S subunit with… | electron microscopy | H | — | — |
| 7O5B | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with… | electron microscopy | c | — | 1 (best 0.84) |
| 7OPE | RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement) | electron microscopy | H | — | 1 (best 0.82) |
| 7OPE | Rqch dr variant bound to 50S-peptidyl-tRNA-rqcp rqc complex (rigid body refinement) | electron microscopy | H | — | — |
| 7QV1 | Bacillus subtilis collided disome (Leading 70S) | electron microscopy | F | — | 1 (best 0.85) |
| 8BUU | ARE-ABCF VmlR2 bound to a 70S ribosome | electron microscopy | F | — | 1 (best 0.83) |
| 8S1U | YlmH bound to stalled 50S subunits with RqcH and PtRNA | electron microscopy | F | — | 1 (best 0.82) |
| P12877 | AlphaFold monomer V2.0 prediction for 50S ribosomal protein L5 (P12877) | predicted | A | — | 1 (best 0.39) |
Experiment against prediction
- 8S1U chain F against the predicted model P12877: TM-score 0.99, RMSD 0.47 Å
- 8BUU chain F against the predicted model P12877: TM-score 0.98, RMSD 0.72 Å
- 7OPE chain H against the predicted model P12877: TM-score 0.97, RMSD 0.82 Å
- 7OPE chain H against the predicted model P12877: TM-score 0.97, RMSD 0.82 Å
- 6HA1 chain F against the predicted model P12877: TM-score 0.97, RMSD 0.93 Å
- 7AS8 chain H against the predicted model P12877: TM-score 0.97, RMSD 0.90 Å
- 7AS8 chain H against the predicted model P12877: TM-score 0.97, RMSD 0.90 Å
- 6HA8 chain F against the predicted model P12877: TM-score 0.96, RMSD 0.99 Å
- 7QV1 chain F against the predicted model P12877: TM-score 0.96, RMSD 1.00 Å
- 6HTQ chain F against the predicted model P12877: TM-score 0.96, RMSD 1.08 Å
Elsewhere
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