AlphaFold monomer V2.0 prediction for 50S ribosomal protein L5 (P12877)

Structure

1 distinct chain · 42% helix, 21% strand (DSSP).

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Compared structures

• 8S1U · YlmH bound to stalled 50S subunits with RqcH and PtRNA · an experimental structure of the same protein · chain A against F, TM-score 0.99
• 8BUU · ARE-ABCF VmlR2 bound to a 70S ribosome · an experimental structure of the same protein · chain A against F, TM-score 0.97
• 7OPE · Rqch dr variant bound to 50S-peptidyl-tRNA-rqcp rqc complex (rigid body refinement) · an experimental structure of the same protein · chain A against H, TM-score 0.96
• 6HA1 · Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide… · an experimental structure of the same protein · chain A against F, TM-score 0.95
• 6HA8 · Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome · an experimental structure of the same protein · chain A against F, TM-score 0.95
• 6HTQ · Stringent response control by a bifunctional RelA enzyme in the presence and absence of… · an experimental structure of the same protein · chain A against F, TM-score 0.94
• 5NJT · Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S… · an experimental structure of the same protein · chain A against Z, TM-score 0.93
• 3J9W · Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex · an experimental structure of the same protein · chain A against BG, TM-score 0.92
• 6TPQ · RNase M5 bound to 50S ribosome with precursor 5S rRNA · an experimental structure of the same protein · chain A against Z, TM-score 0.90
• 7AQD · Structure of the bacterial RQC complex (Translocating State) · an experimental structure of the same protein · chain A against F, TM-score 0.90
• 7AQD · Structure of the bacterial rqc complex (translocating state) · an experimental structure of the same protein · chain A against F, TM-score 0.90
• 7AQC · Structure of the bacterial rqc complex (decoding state) · an experimental structure of the same protein · chain A against F, TM-score 0.90

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P12877
• Elsewhere: UniProt P12877 · AlphaFold DB P12877