AlphaFold monomer V2.0 prediction for 50S ribosomal protein L5 (P12877)

Structure

1 distinct chain · 42% helix, 21% strand (DSSP).

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Compared structures

• 8S1P · YlmH bound to PtRNA-50S · an experimental structure of the same protein · chain A against F, TM-score 0.99
• 8S1U · YlmH bound to stalled 50S subunits with RqcH and PtRNA · an experimental structure of the same protein · chain A against F, TM-score 0.99
• 8QCQ · B. subtilis ApdA-stalled ribosomal complex · an experimental structure of the same protein · chain A against F, TM-score 0.98
• 8BUU · ARE-ABCF VmlR2 bound to a 70S ribosome · an experimental structure of the same protein · chain A against F, TM-score 0.97
• 7OPE · RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement) · an experimental structure of the same protein · chain A against H, TM-score 0.96
• 7OPE · Rqch dr variant bound to 50S-peptidyl-tRNA-rqcp rqc complex (rigid body refinement) · an experimental structure of the same protein · chain A against H, TM-score 0.96
• 6HA1 · Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide… · an experimental structure of the same protein · chain A against F, TM-score 0.95
• 6HA8 · Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome · an experimental structure of the same protein · chain A against F, TM-score 0.95
• 7QV1 · Bacillus subtilis collided disome (Leading 70S) · an experimental structure of the same protein · chain A against F, TM-score 0.95
• 7QV3 · Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S) · an experimental structure of the same protein · chain A against F, TM-score 0.94
• 6HTQ · Stringent response control by a bifunctional RelA enzyme in the presence and absence of… · an experimental structure of the same protein · chain A against F, TM-score 0.94
• 7QV2 · Bacillus subtilis collided disome (Collided 70S) · an experimental structure of the same protein · chain A against F, TM-score 0.93

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P12877
• Elsewhere: UniProt P12877 · AlphaFold DB P12877