UniProt P42921
50S ribosomal protein L4 (P42921)
50S ribosomal protein L4 (UniProt P42921): 30 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 22 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P42921
- Protein
- 50S ribosomal protein L4
- Experimental structures
- 30
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 22 · 12 records with a druggable one
Structures
31 records of P42921 in the MolNFT archive: 30 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3J3V | Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a) | electron microscopy | E | — | — |
| 3J3V | Atomic model of the immature 50S subunit from bacillus subtilis (state I-a) | electron microscopy | E | — | — |
| 3J3W | Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a) | electron microscopy | E | — | — |
| 3J3W | Atomic model of the immature 50S subunit from bacillus subtilis (state II-a) | electron microscopy | E | — | — |
| 3J9W | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | electron microscopy | BF | — | — |
| 5NJT | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | electron microscopy | Y | — | — |
| 6HA1 | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in… | electron microscopy | E | — | — |
| 6HA8 | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | electron microscopy | E | — | — |
| 6HTQ | Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome | electron microscopy | E | — | — |
| 6TNN | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | electron microscopy | Y | MG | 2 (best 0.89) |
| 6TNN | Mini-RNase III (mini-III) bound to 50S ribosome with precursor 23S rRNA | electron microscopy | Y | — | — |
| 6TPQ | RNase M5 bound to 50S ribosome with precursor 5S rRNA | electron microscopy | Y | MG | 2 (best 0.89) |
| 6TPQ | RNase M5 bound to 50S ribosome with precursor 5S rRNA | electron microscopy | Y | — | — |
| 7AQC | Structure of the bacterial rqc complex (decoding state) | electron microscopy | E | — | — |
| 7AQD | Structure of the bacterial RQC complex (Translocating State) | electron microscopy | E | — | — |
| 7AQD | Structure of the bacterial rqc complex (translocating state) | electron microscopy | E | — | — |
| 7AS8 | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA… | electron microscopy | G | — | 3 (best 0.88) |
| 7AS8 | Bacillus subtilis ribosome quality control complex state B. ribosomal 50S subunit with P-tRNA… | electron microscopy | G | — | — |
| 7AS9 | Bacillus subtilis ribosome-associated quality control complex state a. ribosomal 50S subunit with… | electron microscopy | G | — | — |
| 7O5B | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with… | electron microscopy | b | — | 2 (best 0.88) |
| 7OPE | RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement) | electron microscopy | G | — | 1 (best 0.86) |
| 7OPE | Rqch dr variant bound to 50S-peptidyl-tRNA-rqcp rqc complex (rigid body refinement) | electron microscopy | G | — | — |
| 7QV1 | Bacillus subtilis collided disome (Leading 70S) | electron microscopy | E | — | — |
| 7QV2 | Bacillus subtilis collided disome (Collided 70S) | electron microscopy | E | — | 2 (best 0.84) |
| 8BUU | ARE-ABCF VmlR2 bound to a 70S ribosome | electron microscopy | E | — | 1 (best 0.87) |
| 8S1P | YlmH bound to PtRNA-50S | electron microscopy | E | MG | 2 (best 0.85) |
| 8S1U | YlmH bound to stalled 50S subunits with RqcH and PtRNA | electron microscopy | E | — | 1 (best 0.85) |
| 9BS0 | YphC-treated 45SYphC particle. Class 5 | electron microscopy | E | — | 1 (best 0.88) |
| 9BSL | 45SRbgA particle in complex with RbgA and YphC. Class A | electron microscopy | E | — | 2 (best 0.83) |
| 9BSS | 45SRbgA particle in complex with RbgA and YphC. Class B | electron microscopy | E | — | 2 (best 0.82) |
| P42921 | AlphaFold monomer V2.0 prediction for 50S ribosomal protein L4 (P42921) | predicted | A | — | 1 (best 0.42) |
Ligands
- MG · Magnesium ion · in 3 records
Experiment against prediction
- 8BUU chain E against the predicted model P42921: TM-score 0.98, RMSD 0.74 Å
- 8S1P chain E against the predicted model P42921: TM-score 0.98, RMSD 0.75 Å
- 8S1U chain E against the predicted model P42921: TM-score 0.98, RMSD 0.76 Å
- 7O5B chain b against the predicted model P42921: TM-score 0.98, RMSD 0.79 Å
- 7QV1 chain E against the predicted model P42921: TM-score 0.98, RMSD 0.84 Å
- 6HA8 chain E against the predicted model P42921: TM-score 0.98, RMSD 0.84 Å
- 7OPE chain G against the predicted model P42921: TM-score 0.98, RMSD 0.84 Å
- 7OPE chain G against the predicted model P42921: TM-score 0.98, RMSD 0.84 Å
- 7AS8 chain G against the predicted model P42921: TM-score 0.98, RMSD 0.84 Å
- 7AS8 chain G against the predicted model P42921: TM-score 0.98, RMSD 0.84 Å
Elsewhere
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