MolNFT v1 · #164795 · protein + DNA
Saga dub module bound to a ubiqitinated nucleosome
6T9L: “Saga dub module bound to a ubiqitinated nucleosome”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #164795 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6T9L
- Type
- protein + DNA
- Length
- 1,822 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P84233, P62799, Q6AZJ8, P02281, F6R8G8, P50102, Q6WNK7, Q03067, P53165, P0CG48
- Ligands
- ZN
Structure
electron microscopy · 15 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 97 | — | P84233 |
| B | — | protein | 83 | — | P62799 |
| C | — | protein | 103 | — | Q6AZJ8 |
| D | — | protein | 95 | — | P02281 |
| E | — | protein | 96 | — | P84233 |
| F | — | protein | 78 | — | P62799 |
| G | — | protein | 105 | — | Q6AZJ8 |
| H | — | protein | 93 | — | F6R8G8 |
| I | — | dna | 145 | — | — |
| J | — | dna | 145 | — | — |
| K | — | protein | 445 | — | P50102 |
| L | — | protein | 89 | — | Q6WNK7 |
| M | — | protein | 90 | — | Q03067 |
| N | — | protein | 82 | — | P53165 |
| O | — | protein | 76 | — | P0CG48 |
Ligands and binding sites
- ZN · Zinc ion · metal · 8 copies · chains K, M, N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6T9L · SAGA DUB module bound to a ubiqitinated nucleosome · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P84233
- Every structure of UniProt P62799
- Every structure of UniProt Q6AZJ8
- Every structure of UniProt P02281
- Every structure of UniProt F6R8G8
- Every structure of UniProt P50102
- Every structure of UniProt Q6WNK7
- Every structure of UniProt Q03067
- Every structure of UniProt P53165
- Every structure of UniProt P0CG48
- Elsewhere: RCSB PDB 6T9L · PDBe 6T9L · UniProt P84233 · UniProt P62799 · UniProt Q6AZJ8 · UniProt P02281 · UniProt F6R8G8 · UniProt P50102 · UniProt Q6WNK7 · UniProt Q03067 · UniProt P53165 · UniProt P0CG48
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