MolNFT v1 · #163625 · protein
Structure, thermodynamics, and kinetics of plinabulin binding to two tubulin isotypes
6S8L: “Structure, thermodynamics, and kinetics of plinabulin binding to two tubulin isotypes”. X-ray diffraction, 4 ligands (GTP, PN6, GDP). MolNFT v1 #163625 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6S8L
- Type
- protein
- Length
- 999 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P68363, Q13509
- Ligands
- GTP, PN6, GDP, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 424 | — | P68363 |
| B | — | protein | 420 | — | Q13509 |
| F | — | protein | 155 | — | — |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · chains A, B
- PN6 · (3Z,6Z)-3-benzylidene-6-[(5-tert-butyl-1H-imidazol-4-yl)methylidene]piperazine-2,5-dione · ligand · chains B
- GDP · Guanosine-5'-diphosphate · ligand · chains B
- MG · Magnesium ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6S8L · Structure, Thermodynamics, and Kinetics of Plinabulin Binding to two Tubulin Isotypes · the same entry in another collection · chain A against A, TM-score 1.00
- Q13509 · AlphaFold monomer V2.0 prediction for tubulin beta-3 chain (Q13509) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P68363 · AlphaFold monomer V2.0 prediction for tubulin alpha-1B chain (P68363) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68363
- Every structure of UniProt Q13509
- Elsewhere: RCSB PDB 6S8L · PDBe 6S8L · UniProt P68363 · UniProt Q13509
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