MolNFT v1 · #162767 · protein + DNA + RNA
Cryo-EM structure of E. COLI RNA polymerase backtracked elongation complex bound to greb transcription factor
6RIN: “Cryo-EM structure of E. COLI RNA polymerase backtracked elongation complex bound to greb transcription factor”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #162767 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RIN
- Type
- protein + DNA + RNA
- Length
- 3,422 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C3SQ22, P0A7Z4, P0A8V2, P0A8T7, P0A800
- Ligands
- ZN, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| N | — | dna | 19 | — | — |
| T | — | dna | 27 | — | — |
| F | — | protein | 156 | — | C3SQ22 |
| A | — | protein | 228 | — | P0A7Z4 |
| B | — | protein | 229 | — | P0A7Z4 |
| C | — | protein | 1319 | — | P0A8V2 |
| D | — | protein | 1358 | — | P0A8T7 |
| E | — | protein | 73 | — | P0A800 |
| R | — | rna | 13 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RIN · Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex bound to GreB… · the same entry in another collection · chain R against R, TM-score 1.00
- P0A8V2 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (P0A8V2) · a predicted model of the same protein · chain C against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C3SQ22
- Every structure of UniProt P0A7Z4
- Every structure of UniProt P0A8V2
- Every structure of UniProt P0A8T7
- Every structure of UniProt P0A800
- Elsewhere: RCSB PDB 6RIN · PDBe 6RIN · UniProt C3SQ22 · UniProt P0A7Z4 · UniProt P0A8V2 · UniProt P0A8T7 · UniProt P0A800
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