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MolNFT v1 · #156751 · protein

Xfel crystal structure of human melatonin receptor MT2 in complex with ramelteon

6ME9: “Xfel crystal structure of human melatonin receptor MT2 in complex with ramelteon”. X-ray diffraction, 2 ligands (JEV, ZN). MolNFT v1 #156751 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6ME9
Type
protein
Length
843 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P0ABE7, P49286, P00268
Ligands
JEV, ZN

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein448—P0ABE7, P49286, P00268
B—protein395—P0ABE7, P49286, P00268

Ligands and binding sites

  • JEV · N-{2-[(8S)-1,6,7,8-tetrahydro-2H-indeno[5,4-b]furan-8-yl]ethyl}propanamide · ligand · 2 copies · chains A, B
  • ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6ME9 · XFEL crystal structure of human melatonin receptor MT2 in complex with ramelteon · the same entry in another collection · chain A against A, TM-score 1.00
  • P49286 · AlphaFold monomer V2.0 prediction for melatonin receptor type 1B (P49286) · a predicted model of the same protein · chain B against A, TM-score 0.71
  • P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain B against A, TM-score 0.26
  • P00268 · AlphaFold monomer V2.0 prediction for rubredoxin (P00268) · a predicted model of the same protein · chain A against A, TM-score 0.12

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