MolNFT v1 · #155667 · protein + DNA
169 bp nucleosome harboring non-identical cohesive DNA termini.
6LER: “169 bp nucleosome harboring non-identical cohesive DNA termini.”. X-ray diffraction, 2 ligands (CA, K). MolNFT v1 #155667 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LER
- Type
- protein + DNA
- Length
- 2,189 residues
- Chains
- 20
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P68431, P62805, P04908, P06899
- Ligands
- CA, K
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| K, O, A, E | — | protein | 98 | — | P68431 |
| L, B, F | — | protein | 79 | — | P62805 |
| M, Q, C, G | — | protein | 105 | — | P04908 |
| N, R, D, H | — | protein | 96 | — | P06899 |
| P | — | protein | 80 | — | P62805 |
| S, J | — | dna | 169 | — | — |
| T, I | — | dna | 169 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 14 copies · chains S, T, I, J
- K · Potassium ion · metal · 3 copies · chains S, T, I, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6LER · 169 bp nucleosome harboring non-identical cohesive DNA termini. · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68431
- Every structure of UniProt P62805
- Every structure of UniProt P04908
- Every structure of UniProt P06899
- Elsewhere: RCSB PDB 6LER · PDBe 6LER · UniProt P68431 · UniProt P62805 · UniProt P04908 · UniProt P06899
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