MolNFT v1 · #150653 · protein
Crystal structure of the human galnac-T4 in complex with udp, manganese and the diglycopeptide 6.
6H0B: “Crystal structure of the human galnac-T4 in complex with udp, manganese and the diglycopeptide 6.”. X-ray diffraction, 3 ligands (UDP, NGA, MN). MolNFT v1 #150653 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H0B
- Type
- protein
- Length
- 1,051 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8N4A0
- Ligands
- UDP, NGA, MN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 515 | — | Q8N4A0 |
| B | — | protein | 521 | — | Q8N4A0 |
| F | — | protein | 15 | — | — |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains B, F
- NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose · sugar · 2 copies · chains B, F
- MN · Manganese (II) ion · metal · chains B
- EDO · 1,2-ethanediol · additive · 36 copies · chains A, B, F
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H0B · Crystal structure of the human GalNAc-T4 in complex with UDP, manganese and the… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8N4A0 · AlphaFold monomer V2.0 prediction for polypeptide N-acetylgalactosaminyltransferase 4… · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N4A0
- Elsewhere: RCSB PDB 6H0B · PDBe 6H0B · UniProt Q8N4A0
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