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Crystal structure of the human galnac-T4 in complex with udp, manganese and the diglycopeptide 6.

Analyse Crystal structure of the human galnac-T4 in complex with udp, manganese and the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6H0B
Type: protein
Length: 1,051 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q8N4A0
Ligands: UDP, NGA, MN

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	515	—	Q8N4A0
B	—	protein	521	—	Q8N4A0
F	—	protein	15	—	—

Ligands and binding sites

UDP · Uridine-5'-diphosphate · ligand · chains B, F
NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose · sugar · 2 copies · chains B, F
MN · Manganese (II) ion · metal · chains B
EDO · 1,2-ethanediol · additive · 36 copies · chains A, B, F
GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6H0B · Crystal structure of the human GalNAc-T4 in complex with UDP, manganese and the… · the same entry in another collection · chain A against A, TM-score 1.00
Q8N4A0 · AlphaFold monomer V2.0 prediction for polypeptide N-acetylgalactosaminyltransferase 4… · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8N4A0
Elsewhere: RCSB PDB 6H0B · PDBe 6H0B · UniProt Q8N4A0

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