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MolNFT v1 · #148000 · protein

Apo RNA polymerase III - open conformation (OPOL3)

6EU2: “Apo RNA polymerase III - open conformation (OPOL3)”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #148000 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6EU2
Type
protein
Length
4,825 residues
Chains
17
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P04051, P22276, P07703, P47076, P20434, P20435, P35718, P20436, Q04307, P22139, P28000, P40422, P36121, P25441, P32349, P32910, P17890
Ligands
ZN, MG

Structure

electron microscopy · 17 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein1402—P04051
B—protein1114—P22276
C—protein335—P07703
D—protein119—P47076
E—protein215—P20434
F—protein83—P20435
G—protein191—P35718
H—protein140—P20436
I—protein42—Q04307
J—protein68—P22139
K—protein101—P28000
L—protein45—P40422
M—protein165—P36121
N—protein105—P25441
O—protein537—P32349
P—protein123—P32910
Q—protein40—P17890

Ligands and binding sites

  • ZN · Zinc ion · metal · 6 copies · chains A, B, I, J, L
  • MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6EU2 · Apo RNA Polymerase III - open conformation (oPOL3) · the same entry in another collection · chain J against J, TM-score 1.00

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