MolNFT v1 · #144115 · protein + DNA + RNA

Cryoem structure of E.COLI his pause elongation complex without pause hairpin

6BJS: “Cryoem structure of E.COLI his pause elongation complex without pause hairpin”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #144115 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6BJS
Type: protein + DNA + RNA
Length: 3,239 residues
Chains: 8
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0A7Z4, P0A8V2, P0A8T7, P0A800
Ligands: ZN, MG

Structure

electron microscopy · 8 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	dna	23	—	—
B	—	dna	31	—	—
R	—	rna	11	—	—
G	—	protein	222	—	P0A7Z4
H	—	protein	220	—	P0A7Z4
I	—	protein	1316	—	P0A8V2
J	—	protein	1337	—	P0A8T7
K	—	protein	79	—	P0A800

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains J
MG · Magnesium ion · metal · chains R, J

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6BJS · CryoEM structure of E.coli his pause elongation complex without pause hairpin · the same entry in another collection · chain K against K, TM-score 1.00
P0A8V2 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (P0A8V2) · a predicted model of the same protein · chain I against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A7Z4
Every structure of UniProt P0A8V2
Every structure of UniProt P0A8T7
Every structure of UniProt P0A800
Elsewhere: RCSB PDB 6BJS · PDBe 6BJS · UniProt P0A7Z4 · UniProt P0A8V2 · UniProt P0A8T7 · UniProt P0A800

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