MolNFT v1 · #141801 · protein
Structure of photosystem I supercomplex with light-harvesting complexes I and II
5ZJI: “Structure of photosystem I supercomplex with light-harvesting complexes I and II”. Electron microscopy, 13 ligands (CLA, CHL, BCR). MolNFT v1 #141801 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZJI
- Type
- protein
- Length
- 4,087 residues
- Chains
- 21
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B6SSN3, B6T892, B6SUC4, B6SZR1, P04966, A0A059Q6U2, B4FAW3, A0A1D6HY75, B6SRI3, B6U534, O65101, P30980, P62596, B6TR16, B6STT2, B6SQZ7, B6TXS5, P12329, B6T1H1
- Ligands
- CLA, CHL, BCR, LUT, LHG, XAT, LMG, SF4, NEX, PQN, LMU, DGD, CL0
Structure
electron microscopy · 20 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | — | protein | 196 | — | B6SSN3 |
| 2 | — | protein | 207 | — | B6T892 |
| 3 | — | protein | 221 | — | B6SUC4 |
| 4 | — | protein | 199 | — | B6SZR1 |
| A | — | protein | 742 | — | P04966 |
| B | — | protein | 733 | — | A0A059Q6U2 |
| C | — | protein | 81 | — | — |
| D | — | protein | 142 | — | B4FAW3 |
| E | — | protein | 68 | — | A0A1D6HY75 |
| F | — | protein | 158 | — | B6SRI3 |
| G | — | protein | 97 | — | B6U534 |
| H | — | protein | 95 | — | O65101 |
| I | — | protein | 33 | — | P30980 |
| J | — | protein | 41 | — | P62596 |
| K | — | protein | 84 | — | B6TR16 |
| L | — | protein | 166 | — | B6STT2 |
| O | — | protein | 76 | — | B6SQZ7 |
| N | — | protein | 84 | — | B6TXS5 |
| X, Z | — | protein | 218 | — | P12329 |
| Y | — | protein | 228 | — | B6T1H1 |
Ligands and binding sites
- CLA · Chlorophyll A · ligand · 171 copies · chains 1, 4, 2, 3, F, A, B, J, N, K, O, L, H, I, G, X, Z, Y
- CHL · Chlorophyll B · ligand · 30 copies · chains 1, 4, G, 2, 3, N, X, Z, O, Y
- BCR · Beta-carotene · ligand · 26 copies · chains 1, G, 2, 3, 4, A, O, B, J, N, F, I, K, L, H
- LUT · (3R,3'R,6S)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol · ligand · 11 copies · chains 1, F, 2, 3, 4, X, Y, Z
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · ligand · 8 copies · chains 1, 4, 2, 3, A, B, X, O, Y, Z
- XAT · (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-diepoxy-5,6,5',6'-tetrahydro-beta,beta-carotene-3,3'-diol · ligand · 7 copies · chains 1, 2, 3, 4, F, X, Z, Y, O
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · ligand · 5 copies · chains 1, 4, 2, N, G
- SF4 · Iron/sulfur cluster · ligand · 3 copies · chains A, B, C
- NEX · (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R, 6R)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13, 15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol · ligand · 3 copies · chains X, Y, Z
- PQN · Phylloquinone · ligand · 2 copies · chains A, J, B
- LMU · Dodecyl-alpha-D-maltoside · ligand · 2 copies · chains A, N, G
- DGD · Digalactosyl diacyl glycerol (dgdg) · ligand · 2 copies · chains B, C, F, J
- CL0 · Chlorophyll A isomer · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZJI · Structure of photosystem I supercomplex with light-harvesting complexes I and II · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6SSN3
- Every structure of UniProt B6T892
- Every structure of UniProt B6SUC4
- Every structure of UniProt B6SZR1
- Every structure of UniProt P04966
- Every structure of UniProt A0A059Q6U2
- Every structure of UniProt B4FAW3
- Every structure of UniProt A0A1D6HY75
- Every structure of UniProt B6SRI3
- Every structure of UniProt B6U534
- Every structure of UniProt O65101
- Every structure of UniProt P30980
- Every structure of UniProt P62596
- Every structure of UniProt B6TR16
- Every structure of UniProt B6STT2
- Every structure of UniProt B6SQZ7
- Every structure of UniProt B6TXS5
- Every structure of UniProt P12329
- Every structure of UniProt B6T1H1
- Elsewhere: RCSB PDB 5ZJI · PDBe 5ZJI · UniProt B6SSN3 · UniProt B6T892 · UniProt B6SUC4 · UniProt B6SZR1 · UniProt P04966 · UniProt A0A059Q6U2 · UniProt B4FAW3 · UniProt A0A1D6HY75 · UniProt B6SRI3 · UniProt B6U534 · UniProt O65101 · UniProt P30980 · UniProt P62596 · UniProt B6TR16 · UniProt B6STT2 · UniProt B6SQZ7 · UniProt B6TXS5 · UniProt P12329 · UniProt B6T1H1
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