MolNFT v1 · #141003 · protein
RANY197A in complex with RANBP1-CRM1
5YTB: “RANY197A in complex with RANBP1-CRM1”. X-ray diffraction, 3 ligands (GTP, MG, CL). MolNFT v1 #141003 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YTB
- Type
- protein
- Length
- 1,347 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P62826, P41920, P30822
- Ligands
- GTP, MG, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 209 | — | P62826 |
| B | — | protein | 121 | — | P41920 |
| C | — | protein | 1017 | — | P30822 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · 7 copies · chains A, C
- GOL · Glycerol · additive · 3 copies · chains C
- ACT · Acetate ion · additive · 2 copies · chains C
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YTB · RanY197A in complex with RanBP1-CRM1 · the same entry in another collection · chain A against A, TM-score 1.00
- P41920 · AlphaFold monomer V2.0 prediction for ran-specific GTPase-activating protein 1 (P41920) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P30822 · AlphaFold monomer V2.0 prediction for exportin-1 (P30822) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P62826
- Every structure of UniProt P41920
- Every structure of UniProt P30822
- Elsewhere: RCSB PDB 5YTB · PDBe 5YTB · UniProt P62826 · UniProt P41920 · UniProt P30822
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