MolNFT v1 · #137437 · protein + DNA
X-ray crystal structure of bacterial RNA polymerase and pyrg promoter complex
5VOI: “X-ray crystal structure of bacterial RNA polymerase and pyrg promoter complex”. X-ray diffraction, 2 ligands (MG, ZN). MolNFT v1 #137437 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VOI
- Type
- protein + DNA
- Length
- 3,525 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q72I32, Q8RQE9, Q8RQE8, Q8RQE7, Q5SKW1
- Ligands
- MG, ZN
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 226 | — | Q72I32 |
| B | — | protein | 222 | — | Q72I32 |
| C | — | protein | 1111 | — | Q8RQE9 |
| D | — | protein | 1486 | — | Q8RQE8 |
| E | — | protein | 94 | — | Q8RQE7 |
| F | — | protein | 346 | — | Q5SKW1 |
| G | — | dna | 18 | — | — |
| H | — | dna | 22 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains D, B, F, G
- ZN · Zinc ion · metal · 2 copies · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VOI · X-ray crystal structure of bacterial RNA polymerase and pyrG promoter complex · the same entry in another collection · chain H against H, TM-score 1.00
- Q8RQE7 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (Q8RQE7) · a predicted model of the same protein · chain E against A, TM-score 0.97
- Q72I32 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha (Q72I32) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72I32
- Every structure of UniProt Q8RQE9
- Every structure of UniProt Q8RQE8
- Every structure of UniProt Q8RQE7
- Every structure of UniProt Q5SKW1
- Elsewhere: RCSB PDB 5VOI · PDBe 5VOI · UniProt Q72I32 · UniProt Q8RQE9 · UniProt Q8RQE8 · UniProt Q8RQE7 · UniProt Q5SKW1
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